| public CheckInDataset ( System.Int64 datasetId, string comment, string username ) : void | ||
| datasetId | System.Int64 | The identifier of the dataset to be checked-in |
| comment | string | A free form text to describe what has changed with this check-in |
| username | string | The username that performs the check-in, which should be the same as the check-out username |
| return | void | |
public List<Error> FinishUpload(TaskManager taskManager)
{
List<Error> temp = new List<Error>();
DatasetManager dm = new DatasetManager();
DatasetVersion workingCopy = new DatasetVersion();
//datatuple list
List<DataTuple> rows = new List<DataTuple>();
Dataset ds = null;
bool inputWasAltered = false;
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_ID) && TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
{
long id = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASET_ID]);
DataStructureManager dsm = new DataStructureManager();
long iddsd = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASTRUCTURE_ID]);
ds = dm.GetDataset(id);
// Javad: Please check if the dataset does exists!!
#region Progress Informations
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGE, 0);
}
#endregion
#region structured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
{
try
{
//Stopwatch fullTime = Stopwatch.StartNew();
//Stopwatch loadDT = Stopwatch.StartNew();
List<long> datatupleFromDatabaseIds = dm.GetDatasetVersionEffectiveTupleIds(dm.GetDatasetLatestVersion(ds.Id));
//loadDT.Stop();
//Debug.WriteLine("Load DT From Db Time " + loadDT.Elapsed.TotalSeconds.ToString());
StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);
#region excel reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm"))
{
int packageSize = 10000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
ExcelReader reader = new ExcelReader();
//schleife
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
//workingCopy.ContentDescriptors = new List<ContentDescriptor>();
do
{
//Stopwatch packageTime = Stopwatch.StartNew();
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
// open file
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
Stopwatch upload = Stopwatch.StartNew();
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), sds, (int)id, packageSize);
upload.Stop();
Debug.WriteLine("ReadFile: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//XXX Add packagesize to excel read function
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, rows, null, null);
upload.Stop();
Debug.WriteLine("EditDatasetVersion: " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
//Debug.WriteLine("----");
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Stopwatch split = Stopwatch.StartNew();
Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<DataTuple>>();
splittedDatatuples = UploadWizardHelper.GetSplitDatatuples(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
//split.Stop();
//Debug.WriteLine("Split : " + counter + " Time " + split.Elapsed.TotalSeconds.ToString());
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
// upload.Stop();
// Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
// Debug.WriteLine("----");
}
}
}
else
{
}
}
Stream.Close();
//packageTime.Stop();
//Debug.WriteLine("Package : " + counter + " packageTime Time " + packageTime.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0);
//fullTime.Stop();
//Debug.WriteLine("FullTime " + fullTime.Elapsed.TotalSeconds.ToString());
}
#endregion
#region ascii reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".csv") ||
TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".txt"))
{
// open file
AsciiReader reader = new AsciiReader();
//Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
//DatasetManager dm = new DatasetManager();
//Dataset ds = dm.GetDataset(id);
Stopwatch totalTime = Stopwatch.StartNew();
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
int packageSize = 100000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
//schleife
int counter = 0;
do
{
counter++;
inputWasAltered = false;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), (AsciiFileReaderInfo)TaskManager.Bus[TaskManager.FILE_READER_INFO], sds, id, packageSize);
Stream.Close();
if (reader.ErrorMessages.Count > 0)
{
foreach (var err in reader.ErrorMessages)
{
temp.Add(new Error(ErrorType.Dataset, err.GetMessage()));
}
//return temp;
}
//model.Validated = true;
Stopwatch dbTimer = Stopwatch.StartNew();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
dm.EditDatasetVersion(workingCopy, rows, null, null);
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<AbstractTuple>>();
var splittedDatatuples = UploadWizardHelper.GetSplitDatatuples(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
}
else
{
if (rows.Count() > 0)
{
Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<DataTuple>>();
splittedDatatuples = UploadWizardHelper.GetSplitDatatuples(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
inputWasAltered = true;
}
}
dbTimer.Stop();
Debug.WriteLine(" db time" + dbTimer.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0 || inputWasAltered == true);
totalTime.Stop();
Debug.WriteLine(" Total Time " + totalTime.Elapsed.TotalSeconds.ToString());
}
//Stream.Close();
}
#endregion
#region contentdescriptors
//remove all contentdescriptors from the old version
//generatedTXT
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedTXT")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedTXT"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generatedCSV
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedCSV")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedCSV"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
//generated
if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generated")))
{
ContentDescriptor tmp =
workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generated"))
.FirstOrDefault();
dm.DeleteContentDescriptor(tmp);
}
#endregion
// ToDo: Get Comment from ui and users
MoveAndSaveOriginalFileInContentDiscriptor(workingCopy);
dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());
}
catch (Exception e)
{
temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
}
finally
{
}
}
#endregion
#region unstructured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
{
// checkout the dataset, apply the changes, and check it in.
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
SaveFileInContentDiscriptor(workingCopy);
dm.EditDatasetVersion(workingCopy, null, null, null);
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload unstructured data", GetUsernameOrDefault());
}
}
#endregion
}
else
{
temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
}
if (temp.Count <= 0)
{
dm.CheckInDataset(ds.Id, "checked in but no update on data tuples", GetUsernameOrDefault());
}
else
{
dm.UndoCheckoutDataset(ds.Id, GetUsernameOrDefault());
}
return temp;
}
//
// GET: /DIM/Import/
public ActionResult Index()
{
//xml metadata for import
string metadataForImportPath = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), "MetadataIDIV_EXAMPLE.xml");
XmlDocument metadataForImport = new XmlDocument();
metadataForImport.Load(metadataForImportPath);
// metadataStructure DI
long metadataStructureId = 3;
MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
string metadataStructrueName = metadataStructureManager.Repo.Get(metadataStructureId).Name;
// loadMapping file
string path_mappingFile = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), XmlMetadataImportHelper.GetMappingFileName(metadataStructureId, TransmissionType.mappingFileImport, metadataStructrueName));
// XML mapper + mapping file
XmlMapperManager xmlMapperManager = new XmlMapperManager(TransactionDirection.InternToExtern);
xmlMapperManager.Load(path_mappingFile, "IDIV");
// generate intern metadata
XmlDocument metadataResult = xmlMapperManager.Generate(metadataForImport,1);
// generate intern template
XmlMetadataWriter xmlMetadatWriter = new XmlMetadataWriter(BExIS.Xml.Helpers.XmlNodeMode.xPath);
XDocument metadataXml = xmlMetadatWriter.CreateMetadataXml(metadataStructureId);
XmlDocument metadataXmlTemplate = XmlMetadataWriter.ToXmlDocument(metadataXml);
XmlDocument completeMetadata = XmlMetadataImportHelper.FillInXmlAttributes(metadataResult, metadataXmlTemplate);
// create Dataset
//load datastructure
DataStructureManager dsm = new DataStructureManager();
ResearchPlanManager rpm = new ResearchPlanManager();
MetadataStructureManager msm = new MetadataStructureManager();
DatasetManager dm = new DatasetManager();
Dataset dataset = dm.CreateEmptyDataset(dsm.UnStructuredDataStructureRepo.Get(1), rpm.Repo.Get(1), msm.Repo.Get(3));
if (dm.IsDatasetCheckedOutFor(dataset.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(dataset.Id, GetUsernameOrDefault()))
{
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(dataset.Id);
workingCopy.Metadata = completeMetadata;
string title = XmlDatasetHelper.GetInformation(workingCopy, NameAttributeValues.title);
if (String.IsNullOrEmpty(title)) title = "No Title available.";
dm.EditDatasetVersion(workingCopy, null, null, null);
dm.CheckInDataset(dataset.Id, "Metadata was submited.", GetUsernameOrDefault());
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
PermissionManager pm = new PermissionManager();
SubjectManager sm = new SubjectManager();
BExIS.Security.Entities.Subjects.User user = sm.GetUserByName(GetUsernameOrDefault());
foreach (RightType rightType in Enum.GetValues(typeof(RightType)).Cast<RightType>())
{
pm.CreateDataPermission(user.Id, 1, dataset.Id, rightType);
}
}
}
return View();
}
public List<Error> FinishUpload2(TaskManager taskManager)
{
List<Error> temp = new List<Error>();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_ID) && TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
{
long id = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASET_ID]);
DataStructureManager dsm = new DataStructureManager();
long iddsd = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASTRUCTURE_ID]);
//datatuple list
List<DataTuple> rows;
DatasetManager dm = new DatasetManager();
Dataset ds = dm.GetDataset(id);
DatasetVersion workingCopy = new DatasetVersion();
#region Progress Informations
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
}
if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
{
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = 0;
}
else
{
TaskManager.Bus.Add(TaskManager.CURRENTPACKAGE, 0);
}
#endregion
#region structured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
{
try
{
//Stopwatch fullTime = Stopwatch.StartNew();
//Stopwatch loadDT = Stopwatch.StartNew();
List<AbstractTuple> datatupleFromDatabase = dm.GetDatasetVersionEffectiveTuples(dm.GetDatasetLatestVersion(ds.Id));
//loadDT.Stop();
//Debug.WriteLine("Load DT From Db Time " + loadDT.Elapsed.TotalSeconds.ToString());
StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);
#region excel reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm"))
{
int packageSize = 10000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
int counter = 0;
ExcelReader reader = new ExcelReader();
//schleife
dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
throw new Exception(string.Format("Not able to checkout dataset '{0}' for user '{1}'!", ds.Id, GetUsernameOrDefault()));
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
do
{
//Stopwatch packageTime = Stopwatch.StartNew();
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
// open file
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), sds, (int)id, packageSize);
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//XXX Add packagesize to excel read function
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, rows, null, null);
//Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
//Debug.WriteLine("----");
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
//Stopwatch split = Stopwatch.StartNew();
Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<DataTuple>>();
splittedDatatuples = UploadWizardHelper.GetSplitDatatuples2(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
//split.Stop();
//Debug.WriteLine("Split : " + counter + " Time " + split.Elapsed.TotalSeconds.ToString());
//Stopwatch upload = Stopwatch.StartNew();
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
// upload.Stop();
// Debug.WriteLine("Upload : " + counter + " Time " + upload.Elapsed.TotalSeconds.ToString());
// Debug.WriteLine("----");
}
}
}
else
{
}
}
Stream.Close();
//packageTime.Stop();
//Debug.WriteLine("Package : " + counter + " packageTime Time " + packageTime.Elapsed.TotalSeconds.ToString());
} while (rows.Count() > 0);
//fullTime.Stop();
//Debug.WriteLine("FullTime " + fullTime.Elapsed.TotalSeconds.ToString());
}
#endregion
#region ascii reader
if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".csv") ||
TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".txt"))
{
// open file
AsciiReader reader = new AsciiReader();
//Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
//DatasetManager dm = new DatasetManager();
//Dataset ds = dm.GetDataset(id);
Stopwatch totalTime = Stopwatch.StartNew();
if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
{
workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
int packageSize = 100000;
TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
//schleife
int counter = 0;
do
{
counter++;
TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;
Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), (AsciiFileReaderInfo)TaskManager.Bus[TaskManager.FILE_READER_INFO], sds, id, packageSize);
Stream.Close();
if (reader.ErrorMessages.Count > 0)
{
//model.ErrorList = reader.errorMessages;
}
else
{
//model.Validated = true;
Stopwatch dbTimer = Stopwatch.StartNew();
if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
{
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
{
dm.EditDatasetVersion(workingCopy, rows, null, null);
}
if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
{
if (rows.Count() > 0)
{
Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<DataTuple>>();
splittedDatatuples = UploadWizardHelper.GetSplitDatatuples2(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
}
}
}
else
{
if (rows.Count() > 0)
{
Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<DataTuple>>();
splittedDatatuples = UploadWizardHelper.GetSplitDatatuples2(rows, (List<long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabase);
dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
}
}
dbTimer.Stop();
Debug.WriteLine(" db time" + dbTimer.Elapsed.TotalSeconds.ToString());
}
} while (rows.Count() > 0);
totalTime.Stop();
Debug.WriteLine(" Total Time " + totalTime.Elapsed.TotalSeconds.ToString());
}
//Stream.Close();
}
#endregion
// start download generator
// filepath
//string path = "";
//if (workingCopy != null)
//{
// path = GenerateDownloadFile(workingCopy);
// dm.EditDatasetVersion(workingCopy, null, null, null);
//}
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());
LoggerFactory.LogData(id.ToString(), typeof(Dataset).Name, Vaiona.Entities.Logging.CrudState.Updated);
}
catch (Exception e)
{
temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
dm.CheckInDataset(ds.Id, "checked in but no update on data tuples", GetUsernameOrDefault());
}
finally
{
}
}
#endregion
#region unstructured data
if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
{
workingCopy = dm.GetDatasetLatestVersion(ds.Id);
SaveFileInContentDiscriptor(workingCopy);
dm.EditDatasetVersion(workingCopy, null, null, null);
// ToDo: Get Comment from ui and users
dm.CheckInDataset(ds.Id, "upload unstructured data", GetUsernameOrDefault());
}
#endregion
}
else
{
temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
}
return temp;
}
public long createDataset(string dataSetID, XmlDocument metadataXml, long metadataStructureId, DataStructure dataStructure, string researchPlanName)
{
Dataset dataset = new Dataset();
DatasetManager datasetManager = new DatasetManager();
DataStructureManager dataStructureManager = new DataStructureManager();
ResearchPlanManager researchPlanManager = new ResearchPlanManager();
MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
PermissionManager permissionManager = new PermissionManager();
SubjectManager subjectManager = new SubjectManager();
// get existing researchPlan
ResearchPlan researchPlan = researchPlanManager.Repo.Get(r => researchPlanName.Equals(r.Title)).FirstOrDefault();
// get existing metadataStructure (created manualy by using edited Bexis1_XSD)
MetadataStructure metadataStructure = metadataStructureManager.Repo.Get(metadataStructureId);
// update verwendet, da bei unstructured structures im dataset constructor dataset(dataStructure) nullexception
dataset = datasetManager.CreateEmptyDataset(dataStructure, researchPlan, metadataStructure);
long datasetId = dataset.Id;
// dataPermission
List<string> usersWithDataPerm = new List<string>();
// create dataPermission for originalDatasetManager
string originalDatasetManager = metadataXml.SelectSingleNode("Metadata/general/general/originalDatasetManager/originalDatasetManager").InnerText;
User userODM = subjectManager.UsersRepo.Get(u => originalDatasetManager.Equals(u.FullName)).FirstOrDefault();
permissionManager.CreateDataPermission(userODM.Id, 1, dataset.Id, RightType.Create);
permissionManager.CreateDataPermission(userODM.Id, 1, dataset.Id, RightType.View);
permissionManager.CreateDataPermission(userODM.Id, 1, dataset.Id, RightType.Update);
permissionManager.CreateDataPermission(userODM.Id, 1, dataset.Id, RightType.Download);
usersWithDataPerm.Add(originalDatasetManager);
// create dataPermissions for metadataAuthor
string metadataAuthor = metadataXml.SelectSingleNode("Metadata/general/general/metadataCreator/metadataCreator").InnerText;
if (!usersWithDataPerm.Contains(metadataAuthor))
{
User userMA = subjectManager.UsersRepo.Get(u => metadataAuthor.Equals(u.FullName)).FirstOrDefault();
permissionManager.CreateDataPermission(userMA.Id, 1, dataset.Id, RightType.Create);
permissionManager.CreateDataPermission(userMA.Id, 1, dataset.Id, RightType.View);
permissionManager.CreateDataPermission(userMA.Id, 1, dataset.Id, RightType.Update);
permissionManager.CreateDataPermission(userMA.Id, 1, dataset.Id, RightType.Download);
usersWithDataPerm.Add(metadataAuthor);
}
// create dataPermissions for designatedDatasetManager
string designatedDatasetManager = metadataXml.SelectSingleNode("Metadata/general/general/designatedDatasetManager/contactType/designatedDatasetManagerName/designatedDatasetManagerName").InnerText;
if (!usersWithDataPerm.Contains(designatedDatasetManager))
{
User userDDM = subjectManager.UsersRepo.Get(u => designatedDatasetManager.Equals(u.FullName)).FirstOrDefault();
permissionManager.CreateDataPermission(userDDM.Id, 1, dataset.Id, RightType.Create);
permissionManager.CreateDataPermission(userDDM.Id, 1, dataset.Id, RightType.View);
permissionManager.CreateDataPermission(userDDM.Id, 1, dataset.Id, RightType.Update);
permissionManager.CreateDataPermission(userDDM.Id, 1, dataset.Id, RightType.Download);
usersWithDataPerm.Add(designatedDatasetManager);
}
// create dataPermissions for owners
XmlNodeList ownerNodes = metadataXml.SelectNodes("Metadata/general/general/owners/ownerType/owner/owner");
foreach (XmlNode ownerNode in ownerNodes)
{
string owner = ownerNode.InnerText;
if (!usersWithDataPerm.Contains(owner))
{
User userO = subjectManager.UsersRepo.Get(u => owner.Equals(u.FullName)).FirstOrDefault();
if (userO != null)
{
permissionManager.CreateDataPermission(userO.Id, 1, dataset.Id, RightType.Create);
permissionManager.CreateDataPermission(userO.Id, 1, dataset.Id, RightType.View);
permissionManager.CreateDataPermission(userO.Id, 1, dataset.Id, RightType.Update);
permissionManager.CreateDataPermission(userO.Id, 1, dataset.Id, RightType.Download);
usersWithDataPerm.Add(owner);
}
}
}
// integrate metadataXml to dataset
// checkOut
if (datasetManager.IsDatasetCheckedOutFor(datasetId, userODM.Name) || datasetManager.CheckOutDataset(datasetId, userODM.Name))
{
DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId); // get dataset
workingCopy.Metadata = metadataXml; // set metadata to dataset
datasetManager.EditDatasetVersion(workingCopy, null, null, null); // edit dataset
datasetManager.CheckInDataset(datasetId, "Metadata was submited.", userODM.Name); // check in
}
return dataset.Id;
}
private void removeContentDescriptor()
{
DatasetManager dm = new DatasetManager();
Dataset dataset = dm.GetDataset(1);
// check if the dataset is in the checked-in status
DatasetVersion dsVersion = dm.GetDatasetLatestVersion(dataset);
if(dsVersion.ContentDescriptors.Count(p => p.Name.Equals("generated")) > 0)
{
dm.CheckOutDataset(1, "admin");
dsVersion = dm.GetDatasetWorkingCopy(1);
//dm.EditDatasetVersion(dsVersion, null, null, null, null);
// The descriptor to be deleted must be object equal to the one in the list. The following command does the job.
// The condition can be different, but the item should be taken from the list, and any other instance must be released, by setting them to NULL.
var cd = dsVersion.ContentDescriptors.FirstOrDefault(p => p.Name.Equals("generated"));
dm.DeleteContentDescriptor(cd);
dm.CheckInDataset(1, "removed content descriptor:" + cd.Name, "admin");
}
}
/// <summary>
/// create a new dataset, check it out to create the first version, add a tuple to it.
/// </summary>
/// <returns></returns>
private Int64 createDatasetVersion()
{
DataStructureManager dsManager = new DataStructureManager();
ResearchPlanManager rpManager = new ResearchPlanManager();
DatasetManager dm = new DatasetManager();
MetadataStructureManager mdsManager = new MetadataStructureManager();
MDS.MetadataStructure mds = mdsManager.Repo.Query().First();
Dataset ds = dm.CreateEmptyDataset(dsManager.StructuredDataStructureRepo.Get(1), rpManager.Repo.Get(1), mds);
if (dm.IsDatasetCheckedOutFor(ds.Id, "Javad") || dm.CheckOutDataset(ds.Id, "Javad"))
{
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
//DataTuple changed = dm.GetDatasetVersionEffectiveTuples(workingCopy).First();
//changed.VariableValues.First().Value = (new Random()).Next().ToString();
DataTuple dt = dm.DataTupleRepo.Get(1); // its sample data
List<DataTuple> tuples = new List<DataTuple>();
for (int i = 0; i < 10000; i++)
{
DataTuple newDt = new DataTuple();
newDt.XmlAmendments = dt.XmlAmendments;
newDt.XmlVariableValues = dt.XmlVariableValues; // in normal cases, the VariableValues are set and then Dematerialize is called
newDt.Materialize();
newDt.OrderNo = i;
//newDt.TupleAction = TupleAction.Created;//not required
//newDt.Timestamp = DateTime.UtcNow; //required? no, its set in the Edit
//newDt.DatasetVersion = workingCopy;//required? no, its set in the Edit
tuples.Add(newDt);
}
dm.EditDatasetVersion(workingCopy, tuples, null, null);
dm.CheckInDataset(ds.Id, "for testing purposes", "Javad");
dm.DatasetVersionRepo.Evict();
dm.DataTupleRepo.Evict();
dm.DatasetRepo.Evict();
workingCopy.PriliminaryTuples.Clear();
workingCopy = null;
}
var dsId = ds.Id;
ds = null;
return (dsId);
}
/// <summary>
/// CAUTION !!!!!!!!!!!!!!!!!
/// upload bezieht sich derzeit nur auf daten mit einem block (einer tabelle)
/// umsetzung von mehreren blöckes noch nicht geklärt.
/// (für einen wert gibt es eine weitere tabelle)
/// </summary>
/// <param name="dataSetID"></param>
/// <param name="DataBase"></param>
public void uploadData(string dataSetID, string DataBase)
{
DatasetManager datasetManager = new DatasetManager();
DataStructureManager dataStructureManager = new DataStructureManager();
XmlDataReader xmlDataReader = new XmlDataReader();
User user = new User();
string variableNames = "";
// query metadataAuthor and variable names from explorer.datasets
queryAuthorAndVariables(ref user, ref variableNames, dataSetID, DataBase);
List<string> varNames = variableNames.Split(',').ToList();
// get all dataStructures with equal variables count
List<StructuredDataStructure> dataStructures = dataStructureManager.StructuredDataStructureRepo.Get(s =>
varNames.Count().Equals(s.Variables.Count)).ToList();
// get all Ids of dataStructures with equal variables
List<long> dataStructureIds = new List<long>();
foreach (StructuredDataStructure dataStructure in dataStructures)
{
bool isSimilarStructure = true;
foreach (Variable variable in dataStructure.Variables)
{
if (!varNames.Contains(variable.Label))
{
isSimilarStructure &= false;
break;
}
}
if (isSimilarStructure)
dataStructureIds.Add(dataStructure.Id);
}
// get the wanted dataset by comparing the old B1 datasetId out of the datasets with similar dataStructure
Dataset dataset = null;
List<Dataset> datasets = datasetManager.DatasetRepo.Get(d => dataStructureIds.Contains(d.DataStructure.Id)).ToList();
foreach (Dataset ds in datasets)
{
string oldDatasetId = "";
try
{
XmlNode extraID = ds.Versions.FirstOrDefault().Metadata.SelectSingleNode("Metadata/general/general/id/id");
oldDatasetId = extraID.InnerText;
}
catch
{
}
if (oldDatasetId == dataSetID)
{
dataset = ds;
break;
}
}
if (dataset != null)
{
// get distinct and ascending ordered insertdates from DB
List<DB2TimeStamp> distInsertDates = queryDistInsertDates(dataSetID, DataBase);
bool checkObsIds = false;
foreach (DB2TimeStamp insertDate in distInsertDates)
{
List<DataTuple> createdDataTuples = new List<DataTuple>();
List<DataTuple> editedDataTuples = new List<DataTuple>();
List<DataTuple> deletedDataTuples = new List<DataTuple>();
DatasetVersion workingCopy = datasetManager.GetDatasetLatestVersion(dataset.Id); // get dataset
// get obsid, data, deleted and newest for each observation from DB
List<Observation> observations = queryObservation(dataSetID, DataBase, insertDate.ToString());
Dictionary<long, long> obsIdMapsToTupleId = new Dictionary<long, long>();
if (checkObsIds)
{
// get all EffectiveTupleIds
List<long> datasetTupleIds = datasetManager.GetDatasetVersionEffectiveTupleIds(workingCopy).ToList();
// id-mapping-list key=obsId, value=TupleId foreach EffectiveTupleId and obsId from Tuple.Extra
obsIdMapsToTupleId = idMapping(datasetTupleIds, ref datasetManager);
}
// observation counter
int observationIndex = 0;
bool isNewest = true;
foreach (Observation observation in observations) //////////////parallel
{
isNewest = (isNewest && observation.newest != 'Y') ? false : isNewest;
// create dataTuple with xmlDataReader
// split xml to string list and use DataReader.ReadRow
DataTuple dataRow = xmlDataReader.XmlRowReader(observation.data, dataset.DataStructure.Id, observationIndex);
// check if observation.obsid is in id-mapping-list
long TupleId;
if (checkObsIds && obsIdMapsToTupleId.TryGetValue(observation.obsid, out TupleId))
{
DataTuple dataTuple = datasetManager.DataTupleRepo.Get(TupleId);
if (observation.deleted != 'Y')
{
dataTuple.VariableValues = dataRow.VariableValues;
// edit tuple if observation exists as tuple in EffectiveTuple and observation is not deleted
editedDataTuples.Add(dataTuple);
}
else
{
// delete tuple if observation exists as tuple in EffectiveTuple and observ. is deleted
deletedDataTuples.Add(dataTuple);
}
}
else
{
// write the obsId and oldBExISdatasetId in Extra: <extra><obsid>[obsid]</obsid><oldBExISdatasetId>[dataSetID]</oldBExISdatasetId></extra>
dataRow.Extra = oldIdsIntoExtra(observation.obsid, dataSetID, dataRow.Extra);
// create tuple if observation exists not in EffectiveTuple
createdDataTuples.Add(dataRow);
}
observationIndex++; // observation counter
}
checkObsIds = (!checkObsIds && !isNewest) ? true : checkObsIds;
// checkOut
if (datasetManager.IsDatasetCheckedOutFor(dataset.Id, user.Name) || datasetManager.CheckOutDataset(dataset.Id, user.Name))
{
workingCopy = datasetManager.GetDatasetWorkingCopy(dataset.Id); // get dataset
datasetManager.EditDatasetVersion(workingCopy, createdDataTuples, editedDataTuples, deletedDataTuples); // edit dataset
datasetManager.CheckInDataset(dataset.Id, "Primary data row was submited.", user.Name); // checkIn
}
}
}
}
/// <summary>
/// Submit a Dataset based on the imformations
/// in the CreateTaskManager
/// </summary>
public long SubmitDataset()
{
#region create dataset
TaskManager = (CreateTaskmanager)Session["CreateDatasetTaskmanager"];
if (TaskManager.Bus.ContainsKey(CreateTaskmanager.DATASTRUCTURE_ID)
&& TaskManager.Bus.ContainsKey(CreateTaskmanager.RESEARCHPLAN_ID)
&& TaskManager.Bus.ContainsKey(CreateTaskmanager.METADATASTRUCTURE_ID))
{
DatasetManager dm = new DatasetManager();
long datasetId = 0;
// for e new dataset
if (!TaskManager.Bus.ContainsKey(CreateTaskmanager.ENTITY_ID))
{
long datastructureId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.DATASTRUCTURE_ID]);
long researchPlanId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.RESEARCHPLAN_ID]);
long metadataStructureId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.METADATASTRUCTURE_ID]);
DataStructureManager dsm = new DataStructureManager();
DataStructure dataStructure = dsm.StructuredDataStructureRepo.Get(datastructureId);
//if datastructure is not a structured one
if (dataStructure == null) dataStructure = dsm.UnStructuredDataStructureRepo.Get(datastructureId);
ResearchPlanManager rpm = new ResearchPlanManager();
ResearchPlan rp = rpm.Repo.Get(researchPlanId);
MetadataStructureManager msm = new MetadataStructureManager();
MetadataStructure metadataStructure = msm.Repo.Get(metadataStructureId);
var ds = dm.CreateEmptyDataset(dataStructure, rp, metadataStructure);
datasetId = ds.Id;
// add security
if (GetUsernameOrDefault() != "DEFAULT")
{
PermissionManager pm = new PermissionManager();
SubjectManager sm = new SubjectManager();
BExIS.Security.Entities.Subjects.User user = sm.GetUserByName(GetUsernameOrDefault());
foreach (RightType rightType in Enum.GetValues(typeof(RightType)).Cast<RightType>())
{
pm.CreateDataPermission(user.Id, 1, ds.Id, rightType);
}
}
}
else
{
datasetId = Convert.ToInt64(TaskManager.Bus[CreateTaskmanager.ENTITY_ID]);
}
TaskManager = (CreateTaskmanager)Session["CreateDatasetTaskmanager"];
if (dm.IsDatasetCheckedOutFor(datasetId, GetUsernameOrDefault()) || dm.CheckOutDataset(datasetId, GetUsernameOrDefault()))
{
DatasetVersion workingCopy = dm.GetDatasetWorkingCopy(datasetId);
if (TaskManager.Bus.ContainsKey(CreateTaskmanager.METADATA_XML))
{
XDocument xMetadata = (XDocument)TaskManager.Bus[CreateTaskmanager.METADATA_XML];
workingCopy.Metadata = XmlMetadataWriter.ToXmlDocument(xMetadata);
}
string title = XmlDatasetHelper.GetInformation(workingCopy, NameAttributeValues.title);
if(String.IsNullOrEmpty(title)) title = "No Title available.";
TaskManager.AddToBus(CreateTaskmanager.ENTITY_TITLE, title );//workingCopy.Metadata.SelectNodes("Metadata/Description/Description/Title/Title")[0].InnerText);
TaskManager.AddToBus(CreateTaskmanager.ENTITY_ID, datasetId);
dm.EditDatasetVersion(workingCopy, null, null, null);
dm.CheckInDataset(datasetId, "Metadata was submited.", GetUsernameOrDefault());
//add to index
// ToDo check which SearchProvider it is, default luceneprovider
ISearchProvider provider = IoCFactory.Container.ResolveForSession<ISearchProvider>() as ISearchProvider;
provider?.UpdateSingleDatasetIndex(datasetId, IndexingAction.CREATE);
LoggerFactory.LogData(datasetId.ToString(), typeof(Dataset).Name, Vaiona.Entities.Logging.CrudState.Created);
}
return datasetId;
}
#endregion
return -1;
}
