public static GatedDetectorData ExtractFromBlock(Block b, GatedDetectorExtractSpec gate)
{
GatedDetectorData gd = new GatedDetectorData();
GatedDetectorExtractFunction f;
if (gate.Integrate)
{
f = new GatedDetectorExtractFunction(b.GetTOFIntegralArray);
}
else
{
f = new GatedDetectorExtractFunction(b.GetTOFMeanArray);
}
double[] rawData = f(gate.Index, gate.GateLow, gate.GateHigh);
//if (gate.BackgroundSubtract)
//{
//TOFFitResults results = (new TOFFitter()).FitTOF(b.GetAverageTOF(gate.Index));
//double bg = results.Background * (gate.GateHigh - gate.GateLow);
//double[] bgSubData = new double[rawData.Length];
//for (int i = 0; i < rawData.Length; i++) bgSubData[i] = rawData[i] - bg;
//gd.PointValues.AddRange(bgSubData);
//gd.SubtractedBackground = bg;
//}
//else
//{
gd.PointValues.AddRange(rawData);
//}
gd.Gate = gate;
return(gd);
}
//public void FitToTOF(TOF t)
//{
// TOFFitter fitter = new TOFFitter();
// TOFFitResults results = fitter.FitTOF(t);
// GateLow = (int)(results.Centre - (0.5 * WidthFWHM * results.Width) + (OffsetFWHM * results.Width));
// GateHigh = (int)(results.Centre + (0.5 * WidthFWHM * results.Width) + (OffsetFWHM * results.Width));
// Background = results.Background;
//}
//public static GatedDetectorExtractSpec MakeGateFWHM(Block b, int detector, double offset, double width)
//{
// GatedDetectorExtractSpec dg = new GatedDetectorExtractSpec();
// dg.Index = detector;
// dg.OffsetFWHM = offset;
// dg.WidthFWHM = width;
// dg.FitToTOF(b.GetAverageTOF(detector));
// return dg;
//}
public static GatedDetectorExtractSpec MakeWideGate(int detector)
{
GatedDetectorExtractSpec dg = new GatedDetectorExtractSpec();
dg.Index = detector;
dg.GateLow = 0;
dg.GateHigh = 100000000;
return(dg);
}
static DemodulationConfig()
{
// here we stock the class' static library of configs up with some standard configs
// a wide gate - integrate everything
DemodulationConfigBuilder wide = delegate(Block b)
{
DemodulationConfig dc;
GatedDetectorExtractSpec dg0, dg1, dg2, dg3, dg4, dg5, dg6, dg7;
dc = new DemodulationConfig();
dc.AnalysisTag = "wide";
dg0 = GatedDetectorExtractSpec.MakeWideGate(0);
dg0.Name = "bottomProbe";
dg1 = GatedDetectorExtractSpec.MakeWideGate(1);
dg1.Name = "topProbe";
dg2 = GatedDetectorExtractSpec.MakeWideGate(2);
dg2.Name = "magnetometer";
dg2.Integrate = false;
dg3 = GatedDetectorExtractSpec.MakeWideGate(3);
dg3.Name = "gnd";
dg3.Integrate = false;
dg4 = GatedDetectorExtractSpec.MakeWideGate(4);
dg4.Name = "battery";
dg5 = GatedDetectorExtractSpec.MakeWideGate(5);
dg5.Name = "rfCurrent";
dg5.Integrate = false;
dg6 = GatedDetectorExtractSpec.MakeWideGate(6);
dg6.Name = "reflectedrf1Amplitude";
dg7 = GatedDetectorExtractSpec.MakeWideGate(7);
dg7.Name = "reflectedrf2Amplitude";
dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
dc.GatedDetectorExtractSpecs.Add(dg2.Name, dg2);
dc.GatedDetectorExtractSpecs.Add(dg3.Name, dg3);
dc.GatedDetectorExtractSpecs.Add(dg4.Name, dg4);
dc.GatedDetectorExtractSpecs.Add(dg5.Name, dg5);
dc.GatedDetectorExtractSpecs.Add(dg6.Name, dg6);
dc.GatedDetectorExtractSpecs.Add(dg7.Name, dg7);
dc.PointDetectorChannels.Add("MiniFlux1");
dc.PointDetectorChannels.Add("MiniFlux2");
dc.PointDetectorChannels.Add("MiniFlux3");
dc.PointDetectorChannels.Add("NorthCurrent");
dc.PointDetectorChannels.Add("SouthCurrent");
dc.PointDetectorChannels.Add("PumpPD");
dc.PointDetectorChannels.Add("ProbePD");
return(dc);
};
standardConfigs.Add("wide", wide);
//// fwhm of the tof pulse for top and norm, wide gates for everything else.
//AddSliceConfig("fwhm", 0, 1);
//// narrower than fwhm, takes only the center hwhm
//AddSliceConfig("hwhm", 0, 0.5);
//// only the fast half of the fwhm (NOT TRUE - 01Jul08JH)
//AddSliceConfig("fast", -0.5, 0.5);
//// the slow half of the fwhm (NOT TRUE - 01Jul08 JH)
//AddSliceConfig("slow", 0.5, 0.5);
//// the fastest and slowest molecules, used for estimating any tof related systematic.
//// these gates don't overlap with the usual centred analysis gates (fwhm and cgate11).
//AddSliceConfig("vfast", -0.85, 0.5);
//AddSliceConfig("vslow", 0.85, 0.5);
// for testing out different centred-gate widths
for (int i = 1; i < 10; i++)
{
AddFixedSliceConfig("wgate" + i, 2440, i * 20);
}
for (int i = 1; i < 14; i++)
{
AddFixedSliceConfig("shiftgate" + i, 1850 + i * 50, 65);
}
for (int i = 1; i < 7; i++)
{
AddFixedSliceConfig("slicegate" + i, 2050 + i * 50, 25);
}
for (int i = 1; i < 30; i++)
{
AddFixedSliceConfig("pgate" + i, 2090 + i * 10, 10);
}
//// testing different gate centres. "slide0" is centred at -0.7 fwhm, "slide14"
//// is centred and +0.7 fwhm.
//for (int i = 0; i < 15; i++)
// AddSliceConfig("slide" + i, (((double)i) / 10.0) - 0.7, 1);
//// now some finer slices
//double d = -1.4;
//for (int i = 0; i < 15; i++)
//{
// AddSliceConfig("slice" + i, d, 0.2);
// d += 0.2;
//}
//// optimised gates for spring 2009 run
//AddSliceConfig("optimum1", 0.3, 1.1);
//AddSliceConfig("optimum2", 0.2, 1.1);
// "background" gate
DemodulationConfigBuilder background = delegate(Block b)
{
DemodulationConfig dc;
GatedDetectorExtractSpec dg0, dg1;
dc = new DemodulationConfig();
dc.AnalysisTag = "background";
dg0 = GatedDetectorExtractSpec.MakeWideGate(0);
dg0.GateLow = 2550;
dg0.GateHigh = 2600;
dg0.Name = "top";
dg1 = GatedDetectorExtractSpec.MakeWideGate(1);
dg1.Name = "norm";
dg1.GateLow = 750;
dg1.GateHigh = 800;
dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
return(dc);
};
standardConfigs.Add("background", background);
// add some fixed gate slices - the first three are the 1.1 sigma centre portion and two
// non-overlapping portions either side.
AddFixedSliceConfig("cgate11Fixed", 2156, 90); // This is normally ("cgate11Fixed", 2156, 90)
AddFixedSliceConfig("vfastFixed", 2025, 41);
AddFixedSliceConfig("vslowFixed", 2286, 41);
// these "nudge" gates are chosen to, hopefully, tweak the 09_10 dataset so that the
// RF1F channel, DB-normed in the non-linear way, is reduced to near zero
AddFixedSliceConfig("nudgeGate1", 2161, 90);
AddFixedSliceConfig("nudgeGate2", 2169, 90);
AddFixedSliceConfig("nudgeGate3", 2176, 90);
AddFixedSliceConfig("nudgeGate4", 2174, 90);
AddFixedSliceConfig("nudgeGate5", 2188, 90);
AddFixedSliceConfig("nudgeGate6", 2198, 90);
AddFixedSliceConfig("nudgeGate7", 2208, 90);
AddFixedSliceConfig("nudgeGate8", 2228, 90);
AddFixedSliceConfig("wideNudgeGate1", 2198, 100);
AddFixedSliceConfig("narrowNudgeGate1", 2198, 75);
AddFixedSliceConfig("narrowNudgeGate2", 2198, 65);
AddFixedSliceConfig("narrowNudgeGate3", 2198, 55);
AddFixedSliceConfig("narrowNudgeGate4", 2198, 45);
// these two are the fast and slow halves of the 1.1 sigma central gate.
AddFixedSliceConfig("fastFixed", 2110, 45);
AddFixedSliceConfig("slowFixed", 2201, 45);
// two fairly wide gates that take in most of the slow and fast molecules.
// They've been chosed to try and capture the wiggliness of our fast-slow
// wiggles.
AddFixedSliceConfig("widefastFixed", 1950, 150);
AddFixedSliceConfig("wideslowFixed", 2330, 150);
// A narrow centre gate for correlation analysis
AddFixedSliceConfig("cgateNarrowFixed", 2175, 25);
// A gate containing no molecules to look for edms caused by rf pickup
AddFixedSliceConfig("preMolecularBackground", 1850, 50);
// A demodulation config for Kr
AddFixedSliceConfig("centreFixedKr", 2950, 90);
}
//private static void AddSliceConfig(string name, double offset, double width)
//{
// // the slow half of the fwhm
// DemodulationConfigBuilder dcb = delegate(Block b)
// {
// DemodulationConfig dc;
// GatedDetectorExtractSpec dg0, dg1, dg2, dg3, dg4;
// dc = new DemodulationConfig();
// dc.AnalysisTag = name;
// dg0 = GatedDetectorExtractSpec.MakeGateFWHM(b, 0, offset, width);
// dg0.Name = "top";
// dg0.BackgroundSubtract = true;
// dg1 = GatedDetectorExtractSpec.MakeGateFWHM(b, 1, offset, width);
// dg1.Name = "norm";
// dg1.BackgroundSubtract = true;
// dg2 = GatedDetectorExtractSpec.MakeWideGate(2);
// dg2.Name = "mag1";
// dg2.Integrate = false;
// dg3 = GatedDetectorExtractSpec.MakeWideGate(3);
// dg3.Name = "short";
// dg3.Integrate = false;
// dg4 = GatedDetectorExtractSpec.MakeWideGate(4);
// dg4.Name = "battery";
// dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
// dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
// dc.GatedDetectorExtractSpecs.Add(dg2.Name, dg2);
// dc.GatedDetectorExtractSpecs.Add(dg3.Name, dg3);
// dc.GatedDetectorExtractSpecs.Add(dg4.Name, dg4);
// dc.PointDetectorChannels.Add("MiniFlux1");
// dc.PointDetectorChannels.Add("MiniFlux2");
// dc.PointDetectorChannels.Add("MiniFlux3");
// dc.PointDetectorChannels.Add("NorthCurrent");
// dc.PointDetectorChannels.Add("SouthCurrent");
// dc.PointDetectorChannels.Add("PumpPD");
// dc.PointDetectorChannels.Add("ProbePD");
// return dc;
// };
// standardConfigs.Add(name, dcb);
//}
private static void AddFixedSliceConfig(string name, double centre, double width)
{
// the slow half of the fwhm
DemodulationConfigBuilder dcb = delegate(Block b)
{
DemodulationConfig dc;
GatedDetectorExtractSpec dg0, dg1, dg2, dg3, dg4, dg5, dg6, dg7;
//This dodgy bit of code is to make sure that the reflected rf power meters
// only select a single point in the centre of the rf pulse. It won't work
// if either of the rf pulses is centred at a time not divisible w/o rem. by 10us
int rf1CT = (int)b.Config.Settings["rf1CentreTime"];
int rf2CT = (int)b.Config.Settings["rf2CentreTime"];
int clock = (int)b.Config.Settings["clockFrequency"];
int conFac = clock / 1000000;
dc = new DemodulationConfig();
dc.AnalysisTag = name;
dg0 = new GatedDetectorExtractSpec();
dg0.Index = 0;
dg0.Name = "bottomProbe";
dg0.BackgroundSubtract = false;
dg0.GateLow = (int)(centre - width);
dg0.GateHigh = (int)(centre + width);
dg1 = new GatedDetectorExtractSpec();
dg1.Index = 1;
dg1.Name = "topProbe";
dg1.BackgroundSubtract = false;
dg1.GateLow = (int)((centre - width) * kDetectorDistanceRatio);
dg1.GateHigh = (int)((centre + width) * kDetectorDistanceRatio);
dg2 = GatedDetectorExtractSpec.MakeWideGate(2);
dg2.Name = "magnetometer";
dg2.Integrate = false;
dg3 = GatedDetectorExtractSpec.MakeWideGate(3);
dg3.Name = "gnd";
dg3.Integrate = false;
dg4 = GatedDetectorExtractSpec.MakeWideGate(4);
dg4.Name = "battery";
dg4.Integrate = false; //Add this in to analyse By in 3 axis internal magnetometer tests
dg5 = GatedDetectorExtractSpec.MakeWideGate(5);
dg5.Name = "rfCurrent";
dg5.Integrate = false;
dg6 = new GatedDetectorExtractSpec();
dg6.Index = 6;
dg6.Name = "reflectedrf1Amplitude";
dg6.BackgroundSubtract = false;
dg6.GateLow = 800;
dg6.GateHigh = 1800;
//dg6.GateLow = (rf1CT / conFac) - 1;
//dg6.GateHigh = (rf1CT / conFac) + 1;
dg7 = new GatedDetectorExtractSpec();
dg7.Index = 7;
dg7.Name = "reflectedrf2Amplitude";
dg7.BackgroundSubtract = false;
//dg7.GateLow = (rf2CT / conFac) - 1;
//dg7.GateHigh = (rf2CT / conFac) + 1;
dg7.GateLow = 800;
dg7.GateHigh = 1800;
dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
dc.GatedDetectorExtractSpecs.Add(dg2.Name, dg2);
dc.GatedDetectorExtractSpecs.Add(dg3.Name, dg3);
dc.GatedDetectorExtractSpecs.Add(dg4.Name, dg4);
dc.GatedDetectorExtractSpecs.Add(dg5.Name, dg5);
dc.GatedDetectorExtractSpecs.Add(dg6.Name, dg6);
dc.GatedDetectorExtractSpecs.Add(dg7.Name, dg7);
dc.PointDetectorChannels.Add("MiniFlux1");
dc.PointDetectorChannels.Add("MiniFlux2");
dc.PointDetectorChannels.Add("MiniFlux3");
dc.PointDetectorChannels.Add("NorthCurrent");
dc.PointDetectorChannels.Add("SouthCurrent");
dc.PointDetectorChannels.Add("PumpPD");
dc.PointDetectorChannels.Add("ProbePD");
dc.PointDetectorChannels.Add("PhaseLockFrequency");
//dc.PointDetectorChannels.Add("CplusV");
//dc.PointDetectorChannels.Add("CminusV");
return(dc);
};
standardConfigs.Add(name, dcb);
}
// DemodulateBlockNL augments the channel values returned by DemodulateBlock
// with several non-linear combinations of channels (E.B/DB, the correction, etc).
// These non-linear channels are calculated point-by-point for the TOF and then
// integrated according to the Demodulation config. This is calculated for top and
// topNormed detectors only for speed.
//
public DemodulatedBlock DemodulateBlockNL(Block b, DemodulationConfig config)
{
// we start with the standard demodulated block
DemodulatedBlock dblock = DemodulateBlock(b, config);
// First do everything for the un-normalised top detector
int tdi = dblock.DetectorIndices["top"];
// TOF demodulate the block to get the channel wiggles
// the BlockTOFDemodulator only demodulates the PMT detector
BlockTOFDemodulator btdt = new BlockTOFDemodulator();
TOFChannelSet tcst = btdt.TOFDemodulateBlock(b, tdi, false);
// now repeat having normed the block
// normalise the PMT signal
b.Normalise(config.GatedDetectorExtractSpecs["norm"]);
int tndi = dblock.DetectorIndices["topNormed"];
// TOF demodulate the block to get the channel wiggles
// the BlockTOFDemodulator only demodulates the PMT detector
BlockTOFDemodulator btd = new BlockTOFDemodulator();
TOFChannelSet tcs = btd.TOFDemodulateBlock(b, tndi, false);
// get hold of the gating data
GatedDetectorExtractSpec gate = config.GatedDetectorExtractSpecs["top"];
// gate the special channels
TOFChannel edmDB = (TOFChannel)tcs.GetChannel("EDMDB");
double edmDBG = edmDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB = (TOFChannel)tcs.GetChannel("CORRDB");
double corrDBG = corrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB = (TOFChannel)tcs.GetChannel("EDMCORRDB");
double edmCorrDBG = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB_old = (TOFChannel)tcs.GetChannel("CORRDB_OLD");
double corrDBG_old = corrDB_old.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB_old = (TOFChannel)tcs.GetChannel("EDMCORRDB_OLD");
double edmCorrDBG_old = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDB = (TOFChannel)tcs.GetChannel("RF1FDB");
double rf1fDBG = rf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDB = (TOFChannel)tcs.GetChannel("RF2FDB");
double rf2fDBG = rf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBDB = (TOFChannel)tcs.GetChannel("RF1FDBDB");
double rf1fDBDBG = rf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBDB = (TOFChannel)tcs.GetChannel("RF2FDBDB");
double rf2fDBDBG = rf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDB = (TOFChannel)tcs.GetChannel("RF1ADB");
double rf1aDBG = rf1aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDB = (TOFChannel)tcs.GetChannel("RF2ADB");
double rf2aDBG = rf2aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBDB = (TOFChannel)tcs.GetChannel("RF1ADBDB");
double rf1aDBDBG = rf1aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBDB = (TOFChannel)tcs.GetChannel("RF2ADBDB");
double rf2aDBDBG = rf2aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DB = (TOFChannel)tcs.GetChannel("LF1DB");
double lf1DBG = lf1DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBDB = (TOFChannel)tcs.GetChannel("LF1DBDB");
double lf1DBDBG = lf1DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DB = (TOFChannel)tcs.GetChannel("LF2DB");
double lf2DBG = lf2DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBDB = (TOFChannel)tcs.GetChannel("LF2DBDB");
double lf2DBDBG = lf2DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel BDB = (TOFChannel)tcs.GetChannel("BDB");
double BDBG = BDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDB = (TOFChannel)tcs.GetChannel("ERF1FDB");
double erf1fDBG = erf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDB = (TOFChannel)tcs.GetChannel("ERF2FDB");
double erf2fDBG = erf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBDB = (TOFChannel)tcs.GetChannel("ERF1FDBDB");
double erf1fDBDBG = erf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBDB = (TOFChannel)tcs.GetChannel("ERF2FDBDB");
double erf2fDBDBG = erf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf1fCorrDB = (TOFChannel)tcs.GetChannel("BRF1FCORRDB");
double brf1fCorrDBG = brf1fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf2fCorrDB = (TOFChannel)tcs.GetChannel("BRF2FCORRDB");
double brf2fCorrDBG = brf2fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
//Repeat for top
TOFChannel edmDBtop = (TOFChannel)tcst.GetChannel("EDMDB");
double edmDBGtop = edmDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDBtop = (TOFChannel)tcst.GetChannel("CORRDB");
double corrDBGtop = corrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDBtop = (TOFChannel)tcst.GetChannel("EDMCORRDB");
double edmCorrDBGtop = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel corrDB_oldtop = (TOFChannel)tcst.GetChannel("CORRDB_OLD");
double corrDBG_oldtop = corrDB_old.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel edmCorrDB_oldtop = (TOFChannel)tcst.GetChannel("EDMCORRDB_OLD");
double edmCorrDBG_oldtop = edmCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBtop = (TOFChannel)tcst.GetChannel("RF1FDB");
double rf1fDBGtop = rf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBtop = (TOFChannel)tcst.GetChannel("RF2FDB");
double rf2fDBGtop = rf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1fDBDBtop = (TOFChannel)tcst.GetChannel("RF1FDBDB");
double rf1fDBDBGtop = rf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2fDBDBtop = (TOFChannel)tcst.GetChannel("RF2FDBDB");
double rf2fDBDBGtop = rf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBtop = (TOFChannel)tcst.GetChannel("RF1ADB");
double rf1aDBGtop = rf1aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBtop = (TOFChannel)tcst.GetChannel("RF2ADB");
double rf2aDBGtop = rf2aDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf1aDBDBtop = (TOFChannel)tcst.GetChannel("RF1ADBDB");
double rf1aDBDBGtop = rf1aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel rf2aDBDBtop = (TOFChannel)tcst.GetChannel("RF2ADBDB");
double rf2aDBDBGtop = rf2aDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBtop = (TOFChannel)tcst.GetChannel("LF1DB");
double lf1DBGtop = lf1DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf1DBDBtop = (TOFChannel)tcst.GetChannel("LF1DBDB");
double lf1DBDBGtop = lf1DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBtop = (TOFChannel)tcst.GetChannel("LF2DB");
double lf2DBGtop = lf2DB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel lf2DBDBtop = (TOFChannel)tcst.GetChannel("LF2DBDB");
double lf2DBDBGtop = lf2DBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel BDBtop = (TOFChannel)tcst.GetChannel("BDB");
double BDBGtop = BDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBtop = (TOFChannel)tcst.GetChannel("ERF1FDB");
double erf1fDBGtop = erf1fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBtop = (TOFChannel)tcst.GetChannel("ERF2FDB");
double erf2fDBGtop = erf2fDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf1fDBDBtop = (TOFChannel)tcst.GetChannel("ERF1FDBDB");
double erf1fDBDBGtop = erf1fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel erf2fDBDBtop = (TOFChannel)tcst.GetChannel("ERF2FDBDB");
double erf2fDBDBGtop = erf2fDBDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf1fCorrDBtop = (TOFChannel)tcst.GetChannel("BRF1FCORRDB");
double brf1fCorrDBGtop = brf1fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
TOFChannel brf2fCorrDBtop = (TOFChannel)tcst.GetChannel("BRF2FCORRDB");
double brf2fCorrDBGtop = brf2fCorrDB.Difference.GatedMean(gate.GateLow, gate.GateHigh);
// we bodge the errors, which aren't really used for much anyway
// by just using the error from the normal dblock. I ignore the error in DB.
// I use the simple correction error for the full correction. Doesn't much matter.
DetectorChannelValues dcv = dblock.ChannelValues[tndi];
double edmDBE = dcv.GetError(new string[] { "E", "B" }) / dcv.GetValue(new string[] { "DB" });
double corrDBE = Math.Sqrt(
Math.Pow(dcv.GetValue(new string[] { "E", "DB" }) * dcv.GetError(new string[] { "B" }), 2) +
Math.Pow(dcv.GetValue(new string[] { "B" }) * dcv.GetError(new string[] { "E", "DB" }), 2))
/ Math.Pow(dcv.GetValue(new string[] { "DB" }), 2);
double edmCorrDBE = Math.Sqrt(Math.Pow(edmDBE, 2) + Math.Pow(corrDBE, 2));
double rf1fDBE = dcv.GetError(new string[] { "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double rf2fDBE = dcv.GetError(new string[] { "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double rf1fDBDBE = dcv.GetError(new string[] { "DB", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double rf2fDBDBE = dcv.GetError(new string[] { "DB", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double rf1aDBE = dcv.GetError(new string[] { "RF1A" }) / dcv.GetValue(new string[] { "DB" });
double rf2aDBE = dcv.GetError(new string[] { "RF2A" }) / dcv.GetValue(new string[] { "DB" });
double rf1aDBDBE = dcv.GetError(new string[] { "DB", "RF1A" }) / dcv.GetValue(new string[] { "DB" });
double rf2aDBDBE = dcv.GetError(new string[] { "DB", "RF2A" }) / dcv.GetValue(new string[] { "DB" });
double lf1DBE = dcv.GetError(new string[] { "LF1" }) / dcv.GetValue(new string[] { "DB" });
double lf1DBDBE = dcv.GetError(new string[] { "DB", "LF1" }) / dcv.GetValue(new string[] { "DB" });
double lf2DBE = dcv.GetError(new string[] { "LF2" }) / dcv.GetValue(new string[] { "DB" });
double lf2DBDBE = dcv.GetError(new string[] { "DB", "LF2" }) / dcv.GetValue(new string[] { "DB" });
double brf1fDBE = dcv.GetError(new string[] { "B", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double brf2fDBE = dcv.GetError(new string[] { "B", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double erf1fDBE = dcv.GetError(new string[] { "E", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double erf2fDBE = dcv.GetError(new string[] { "E", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double erf1fDBDBE = dcv.GetError(new string[] { "E", "DB", "RF1F" }) / dcv.GetValue(new string[] { "DB" });
double erf2fDBDBE = dcv.GetError(new string[] { "E", "DB", "RF2F" }) / dcv.GetValue(new string[] { "DB" });
double BDBE = dcv.GetError(new string[] { "B" }) / dcv.GetValue(new string[] { "DB" });
//repeat for top
DetectorChannelValues dcvt = dblock.ChannelValues[tdi];
double lf2DBEtop = dcvt.GetError(new string[] { "LF2" }) / dcvt.GetValue(new string[] { "DB" }); //Change the db channel back to topNormed
double lf2DBDBEtop = dcvt.GetError(new string[] { "DB", "LF2" }) / dcvt.GetValue(new string[] { "DB" }); //Change the db channel back to topNormed
double edmDBEtop = dcvt.GetError(new string[] { "E", "B" }) / dcvt.GetValue(new string[] { "DB" });
double corrDBEtop = Math.Sqrt(
Math.Pow(dcvt.GetValue(new string[] { "E", "DB" }) * dcvt.GetError(new string[] { "B" }), 2) +
Math.Pow(dcvt.GetValue(new string[] { "B" }) * dcvt.GetError(new string[] { "E", "DB" }), 2))
/ Math.Pow(dcvt.GetValue(new string[] { "DB" }), 2);
double edmCorrDBEtop = Math.Sqrt(Math.Pow(edmDBEtop, 2) + Math.Pow(corrDBEtop, 2));
double rf1fDBEtop = dcvt.GetError(new string[] { "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double rf2fDBEtop = dcvt.GetError(new string[] { "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double rf1fDBDBEtop = dcvt.GetError(new string[] { "DB", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double rf2fDBDBEtop = dcvt.GetError(new string[] { "DB", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double rf1aDBEtop = dcvt.GetError(new string[] { "RF1A" }) / dcvt.GetValue(new string[] { "DB" });
double rf2aDBEtop = dcvt.GetError(new string[] { "RF2A" }) / dcvt.GetValue(new string[] { "DB" });
double rf1aDBDBEtop = dcvt.GetError(new string[] { "DB", "RF1A" }) / dcvt.GetValue(new string[] { "DB" });
double rf2aDBDBEtop = dcvt.GetError(new string[] { "DB", "RF2A" }) / dcvt.GetValue(new string[] { "DB" });
double lf1DBEtop = dcvt.GetError(new string[] { "LF1" }) / dcvt.GetValue(new string[] { "DB" });
double lf1DBDBEtop = dcvt.GetError(new string[] { "DB", "LF1" }) / dcvt.GetValue(new string[] { "DB" });
double brf1fDBEtop = dcvt.GetError(new string[] { "B", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double brf2fDBEtop = dcvt.GetError(new string[] { "B", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double erf1fDBEtop = dcvt.GetError(new string[] { "E", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double erf2fDBEtop = dcvt.GetError(new string[] { "E", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double erf1fDBDBEtop = dcvt.GetError(new string[] { "E", "DB", "RF1F" }) / dcvt.GetValue(new string[] { "DB" });
double erf2fDBDBEtop = dcvt.GetError(new string[] { "E", "DB", "RF2F" }) / dcvt.GetValue(new string[] { "DB" });
double BDBEtop = dcvt.GetError(new string[] { "B" }) / dcvt.GetValue(new string[] { "DB" });
// stuff the data into the dblock
dblock.ChannelValues[tndi].SpecialValues["EDMDB"] = new double[] { edmDBG, edmDBE };
dblock.ChannelValues[tndi].SpecialValues["CORRDB"] = new double[] { corrDBG, corrDBE };
dblock.ChannelValues[tndi].SpecialValues["EDMCORRDB"] = new double[] { edmCorrDBG, edmCorrDBE };
dblock.ChannelValues[tndi].SpecialValues["CORRDB_OLD"] = new double[] { corrDBG_old, corrDBE };
dblock.ChannelValues[tndi].SpecialValues["EDMCORRDB_OLD"] = new double[] { edmCorrDBG_old, edmCorrDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1FDB"] = new double[] { rf1fDBG, rf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2FDB"] = new double[] { rf2fDBG, rf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1FDBDB"] = new double[] { rf1fDBDBG, rf1fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2FDBDB"] = new double[] { rf2fDBDBG, rf2fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1ADB"] = new double[] { rf1aDBG, rf1aDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2ADB"] = new double[] { rf2aDBG, rf2aDBE };
dblock.ChannelValues[tndi].SpecialValues["RF1ADBDB"] = new double[] { rf1aDBDBG, rf1aDBDBE };
dblock.ChannelValues[tndi].SpecialValues["RF2ADBDB"] = new double[] { rf2aDBDBG, rf2aDBDBE };
dblock.ChannelValues[tndi].SpecialValues["BRF1FCORRDB"] = new double[] { brf1fCorrDBG, brf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["BRF2FCORRDB"] = new double[] { brf2fCorrDBG, brf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF1FDB"] = new double[] { erf1fDBG, erf1fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF2FDB"] = new double[] { erf2fDBG, erf2fDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF1FDBDB"] = new double[] { erf1fDBDBG, erf1fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["ERF2FDBDB"] = new double[] { erf2fDBDBG, erf2fDBDBE };
dblock.ChannelValues[tndi].SpecialValues["LF1DB"] = new double[] { lf1DBG, lf1DBE };
dblock.ChannelValues[tndi].SpecialValues["LF1DBDB"] = new double[] { lf1DBDBG, lf1DBDBE };
dblock.ChannelValues[tndi].SpecialValues["LF2DB"] = new double[] { lf2DBG, lf2DBE };
dblock.ChannelValues[tndi].SpecialValues["LF2DBDB"] = new double[] { lf2DBDBG, lf2DBDBE };
dblock.ChannelValues[tndi].SpecialValues["BDB"] = new double[] { BDBG, BDBE };
dblock.ChannelValues[tdi].SpecialValues["EDMDB"] = new double[] { edmDBGtop, edmDBEtop };
dblock.ChannelValues[tdi].SpecialValues["CORRDB"] = new double[] { corrDBGtop, corrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["EDMCORRDB"] = new double[] { edmCorrDBGtop, edmCorrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["CORRDB_OLD"] = new double[] { corrDBG_oldtop, corrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["EDMCORRDB_OLD"] = new double[] { edmCorrDBG_oldtop, edmCorrDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1FDB"] = new double[] { rf1fDBGtop, rf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2FDB"] = new double[] { rf2fDBGtop, rf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1FDBDB"] = new double[] { rf1fDBDBGtop, rf1fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2FDBDB"] = new double[] { rf2fDBDBGtop, rf2fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1ADB"] = new double[] { rf1aDBGtop, rf1aDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2ADB"] = new double[] { rf2aDBGtop, rf2aDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF1ADBDB"] = new double[] { rf1aDBDBGtop, rf1aDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["RF2ADBDB"] = new double[] { rf2aDBDBGtop, rf2aDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BRF1FCORRDB"] = new double[] { brf1fCorrDBGtop, brf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BRF2FCORRDB"] = new double[] { brf2fCorrDBGtop, brf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF1FDB"] = new double[] { erf1fDBGtop, erf1fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF2FDB"] = new double[] { erf2fDBGtop, erf2fDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF1FDBDB"] = new double[] { erf1fDBDBGtop, erf1fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["ERF2FDBDB"] = new double[] { erf2fDBDBGtop, erf2fDBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF1DB"] = new double[] { lf1DBGtop, lf1DBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF1DBDB"] = new double[] { lf1DBDBGtop, lf1DBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF2DB"] = new double[] { lf2DBGtop, lf2DBEtop };
dblock.ChannelValues[tdi].SpecialValues["LF2DBDB"] = new double[] { lf2DBDBGtop, lf2DBDBEtop };
dblock.ChannelValues[tdi].SpecialValues["BDB"] = new double[] { BDBGtop, BDBEtop };
return(dblock);
}
//private static void AddSliceConfig(string name, double offset, double width)
//{
// // the slow half of the fwhm
// DemodulationConfigBuilder dcb = delegate(Block b)
// {
// DemodulationConfig dc;
// GatedDetectorExtractSpec dg0, dg1, dg2, dg3, dg4;
// dc = new DemodulationConfig();
// dc.AnalysisTag = name;
// dg0 = GatedDetectorExtractSpec.MakeGateFWHM(b, 0, offset, width);
// dg0.Name = "top";
// dg0.BackgroundSubtract = true;
// dg1 = GatedDetectorExtractSpec.MakeGateFWHM(b, 1, offset, width);
// dg1.Name = "norm";
// dg1.BackgroundSubtract = true;
// dg2 = GatedDetectorExtractSpec.MakeWideGate(2);
// dg2.Name = "mag1";
// dg2.Integrate = false;
// dg3 = GatedDetectorExtractSpec.MakeWideGate(3);
// dg3.Name = "short";
// dg3.Integrate = false;
// dg4 = GatedDetectorExtractSpec.MakeWideGate(4);
// dg4.Name = "battery";
// dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
// dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
// dc.GatedDetectorExtractSpecs.Add(dg2.Name, dg2);
// dc.GatedDetectorExtractSpecs.Add(dg3.Name, dg3);
// dc.GatedDetectorExtractSpecs.Add(dg4.Name, dg4);
// dc.PointDetectorChannels.Add("MiniFlux1");
// dc.PointDetectorChannels.Add("MiniFlux2");
// dc.PointDetectorChannels.Add("MiniFlux3");
// dc.PointDetectorChannels.Add("NorthCurrent");
// dc.PointDetectorChannels.Add("SouthCurrent");
// dc.PointDetectorChannels.Add("PumpPD");
// dc.PointDetectorChannels.Add("ProbePD");
// return dc;
// };
// standardConfigs.Add(name, dcb);
//}
private static void AddFixedSliceConfig(string name, double centre, double width)
{
// the slow half of the fwhm
DemodulationConfigBuilder dcb = delegate(Block b)
{
DemodulationConfig dc;
GatedDetectorExtractSpec dg0, dg1, dg2, dg3, dg4, dg5, dg6, dg7;
dc = new DemodulationConfig();
dc.AnalysisTag = name;
dg0 = new GatedDetectorExtractSpec();
dg0.Index = 0;
dg0.Name = "top";
dg0.BackgroundSubtract = false;
dg0.GateLow = (int)(centre - width);
dg0.GateHigh = (int)(centre + width);
dg1 = new GatedDetectorExtractSpec();
dg1.Index = 1;
dg1.Name = "norm";
dg1.BackgroundSubtract = false;
dg1.GateLow = (int)((centre - width) / kDetectorDistanceRatio);
dg1.GateHigh = (int)((centre + width) / kDetectorDistanceRatio);
dg2 = GatedDetectorExtractSpec.MakeWideGate(2);
dg2.Name = "magnetometer";
dg2.Integrate = false;
dg3 = GatedDetectorExtractSpec.MakeWideGate(3);
dg3.Name = "gnd";
dg3.Integrate = false;
dg4 = GatedDetectorExtractSpec.MakeWideGate(4);
dg4.Name = "battery";
dg5 = GatedDetectorExtractSpec.MakeWideGate(5);
dg5.Name = "rfCurrent";
dg5.Integrate = false;
dg6 = new GatedDetectorExtractSpec();
dg6.Index = 6;
dg6.Name = "reflectedrf1Amplitude";
dg6.BackgroundSubtract = false;
dg6.GateLow = 819;
dg6.GateHigh = 821;
dg7 = new GatedDetectorExtractSpec();
dg7.Index = 7;
dg7.Name = "reflectedrf2Amplitude";
dg7.BackgroundSubtract = false;
dg7.GateLow = 1799;
dg7.GateHigh = 1801;
dc.GatedDetectorExtractSpecs.Add(dg0.Name, dg0);
dc.GatedDetectorExtractSpecs.Add(dg1.Name, dg1);
dc.GatedDetectorExtractSpecs.Add(dg2.Name, dg2);
dc.GatedDetectorExtractSpecs.Add(dg3.Name, dg3);
dc.GatedDetectorExtractSpecs.Add(dg4.Name, dg4);
dc.GatedDetectorExtractSpecs.Add(dg5.Name, dg5);
dc.GatedDetectorExtractSpecs.Add(dg6.Name, dg6);
dc.GatedDetectorExtractSpecs.Add(dg7.Name, dg7);
dc.PointDetectorChannels.Add("MiniFlux1");
dc.PointDetectorChannels.Add("MiniFlux2");
dc.PointDetectorChannels.Add("MiniFlux3");
dc.PointDetectorChannels.Add("NorthCurrent");
dc.PointDetectorChannels.Add("SouthCurrent");
dc.PointDetectorChannels.Add("PumpPD");
dc.PointDetectorChannels.Add("ProbePD");
return(dc);
};
standardConfigs.Add(name, dcb);
}
