/// <summary>
/// Given a string, builds its suffix tree.
/// </summary>
/// <param name="text">The string for which the suffix tree is being built. </param>
/// <returns>The root of the suffix tree. </returns>
public static SuffixTreeNode Build(string text)
{
/*Assuming text does not contain $, appending $. Without this, some suffixes will be implicit in the tree. */
string extendedText = text + "$";
int n = extendedText.Length;
SuffixTreeNode root = null;
for (int i = n - 2; i >= 0; i--) /* Start building the Suffix tree by the shortest suffix. For example in string 'data$', the shortest suffix is 'a$'. */
{
string suffix = extendedText.Substring(i);
if (root == null) /* If root is null, create a root node, and make the current suffix its only child. */
{
root = new SuffixTreeNode {
IsRoot = true
};
root.Children.Add(new SuffixTreeNode {
IsLeaf = true, StringValue = suffix, StartIndex = i
});
}
else /* Otherwise traverse the tree starting from root to find the right position for the current suffix. */
{
Insert(root, suffix, i);
}
}
return(root);
}
/// <summary>
/// Inserts the given suffix in the tree. Notice that the suffix is not necessarily inserted as a while. On the traversal of the tree, the intermediate nodes that have common prefixes with these suffix, make the suffix to break down.
/// </summary>
/// <param name="root">The root node of a suffix tree. </param>
/// <param name="suffix">The suffix string that should be inserted in the suffix tree. </param>
/// <param name="startIndex">The start index of the suffix in its container string. </param>
public static void Insert(SuffixTreeNode root, string suffix, int startIndex)
{
SuffixTreeNode node = null;
var nodes = root.Children.Where(c => c.StringValue.StartsWith(suffix[0])); /* Before creating a new branch in the tree, look for a branch of the root that has a common starting character with the current suffix. */
if (!nodes.Any()) /* If no child of the root has a common starting character with suffix, create a new child. */
{
root.Children.Add(new SuffixTreeNode {
IsLeaf = true, StringValue = suffix, StartIndex = startIndex
});
return;
}
Contract.Assert(nodes.ToList().Count == 1); /* It is expected that all the branches (children) of a node start with distinct characters. */
node = nodes.ToList()?[0]; /* Take the only child that has the same starting character as the suffix and continue traversing down its children. */
int indexOverSuffix = 1;
while (true)
{
int j = 1;
while (j < node.StringValue.Length && indexOverSuffix < suffix.Length && node.StringValue[j] == suffix[indexOverSuffix])
{
j++;
indexOverSuffix++;
}
if (j <= node.StringValue.Length - 1) /* This means node should be converted to a intermediate node, with two children, and new suffix string */
{
var child1 = new SuffixTreeNode {
IsLeaf = true, StringValue = node.StringValue.Substring(j), StartIndex = node.StartIndex
};
var child2 = new SuffixTreeNode {
IsLeaf = true, StringValue = suffix.Substring(indexOverSuffix), StartIndex = startIndex
};
node.IsLeaf = false;
node.IsRoot = false;
node.IsIntermediate = true;
node.StartIndex = -1;
node.StringValue = node.StringValue.Substring(0, node.StringValue.Length - 1);
node.Children.Add(child1);
node.Children.Add(child2);
break;
}
else if (j == node.StringValue.Length && indexOverSuffix < suffix.Length)
{
nodes = node.Children.Where(c => c.StringValue.StartsWith(suffix[indexOverSuffix]));
if (!nodes.Any())
{
node.Children.Add(new SuffixTreeNode {
IsLeaf = true, StringValue = suffix.Substring(indexOverSuffix), StartIndex = startIndex
});
break;
}
Contract.Assert(nodes.ToList().Count == 1); /* It is expected that all the branches (children) of a node start with distinct characters. */
node = nodes.ToList()[0];
indexOverSuffix++;
}
}
}