public HelperTCell(ITissue parent, int mpLen)
: base(CellType.Helper, parent)
{
Activators = new List<Address>();
// generate a random molecular pattern
// NOTE: pattern vectors should be normalized
var pat = new double[mpLen];
for (int i = 0; i < mpLen; i++)
{
pat[i] = RandGen.NextDouble();
}
Pattern = new MolecularPattern(pat);
}
private Point GetPatternAsPoint(MolecularPattern mp)
{
// TODO: X64
/*// returns the cartesian representation of the pattern
byte[] array = new byte[4];
mp.CopyTo(array, 0);
int xy = BitConverter.ToInt32(array, 0);
int allOneLower = (int)Math.Pow(2, Globals.NumOfNocleutidesPerGen) - 1;
int y = xy & (allOneLower); // y = lower half bits
int x = (xy - y) / (allOneLower + 1); // x = higher half bits
return new Point(x, y);*/
return new Point(0, 0);
}
public double Affinity(MolecularPattern mp, AffinityType type)
{
if (pattern.Length != mp.Length)
{
throw new Exception("Patterns must have the same lengths.");
}
double ndist = 0; // normalized distance (must be between 0 and 1)
switch (type)
{
case AffinityType.Euclidean:
for (var i = 0; i < pattern.Length; i++)
{
ndist += Math.Pow(pattern[i] - mp[i], 2);
}
ndist = Math.Sqrt(ndist) / Math.Sqrt(pattern.Length);
break;
}
return(1 - ndist);
}
public double Affinity(MolecularPattern mp, AffinityType type)
{
if (pattern.Length != mp.Length)
{
throw new Exception("Patterns must have the same lengths.");
}
double ndist = 0; // normalized distance (must be between 0 and 1)
switch (type)
{
case AffinityType.Euclidean:
for (var i = 0; i < pattern.Length; i++)
{
ndist += Math.Pow(pattern[i] - mp[i], 2);
}
ndist = Math.Sqrt(ndist) / Math.Sqrt(pattern.Length);
break;
}
return 1 - ndist;
}
public ProcessSdampEventArgs(MolecularPattern mp)
{
Mp = mp;
}
public Sdamp(Address sender, MolecularPattern mp)
: base(sender)
{
Pattern = mp;
}
public Antigen(Address sender, MolecularPattern pattern, T rawData)
: base(sender)
{
Spamp = pattern;
RawData = rawData;
}
public Stimulation(Address sender, MolecularPattern peptide, double costimulationLevel)
: base(sender)
{
Peptide = peptide;
Concentration = costimulationLevel; // concentration of Stimulation indicates co-stimulation
}
