public uint_vectorEnumerator(uint_vector collection) { collectionRef = collection; currentIndex = -1; currentObject = null; currentSize = collectionRef.Count; }
public corrected_intensity_metric(uint lane, uint tile, uint cycle, uint_vector called_counts) : this(c_csharp_metricsPINVOKE.new_corrected_intensity_metric__SWIG_6(lane, tile, cycle, uint_vector.getCPtr(called_counts)), true) { if (c_csharp_metricsPINVOKE.SWIGPendingException.Pending) { throw c_csharp_metricsPINVOKE.SWIGPendingException.Retrieve(); } }
public q_metric(uint lane, uint tile, uint cycle, uint_vector qscore_hist) : this(c_csharp_metricsPINVOKE.new_q_metric__SWIG_2(lane, tile, cycle, uint_vector.getCPtr(qscore_hist)), true) { if (c_csharp_metricsPINVOKE.SWIGPendingException.Pending) { throw c_csharp_metricsPINVOKE.SWIGPendingException.Retrieve(); } }
public uint_vector(uint_vector other) : this(c_csharp_runPINVOKE.new_uint_vector__SWIG_1(uint_vector.getCPtr(other)), true) { if (c_csharp_runPINVOKE.SWIGPendingException.Pending) { throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve(); } }
public void set(uint lane, uint tile, uint cycle, uint_vector qscore_hist) { c_csharp_metricsPINVOKE.q_metric_set(swigCPtr, lane, tile, cycle, uint_vector.getCPtr(qscore_hist)); if (c_csharp_metricsPINVOKE.SWIGPendingException.Pending) { throw c_csharp_metricsPINVOKE.SWIGPendingException.Retrieve(); } }
public void set(uint lane, uint tile, uint cycle, uint_vector called_counts) { c_csharp_metricsPINVOKE.corrected_intensity_metric_set(swigCPtr, lane, tile, cycle, uint_vector.getCPtr(called_counts)); if (c_csharp_metricsPINVOKE.SWIGPendingException.Pending) { throw c_csharp_metricsPINVOKE.SWIGPendingException.Retrieve(); } }
public void SetRange(int index, uint_vector values) { c_csharp_runPINVOKE.uint_vector_SetRange(swigCPtr, index, uint_vector.getCPtr(values)); if (c_csharp_runPINVOKE.SWIGPendingException.Pending) { throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve(); } }
public uint_vector GetRange(int index, int count) { global::System.IntPtr cPtr = c_csharp_runPINVOKE.uint_vector_GetRange(swigCPtr, index, count); uint_vector ret = (cPtr == global::System.IntPtr.Zero) ? null : new uint_vector(cPtr, true); if (c_csharp_runPINVOKE.SWIGPendingException.Pending) { throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve(); } return(ret); }
public static uint_vector Repeat(uint value, int count) { global::System.IntPtr cPtr = c_csharp_runPINVOKE.uint_vector_Repeat(value, count); uint_vector ret = (cPtr == global::System.IntPtr.Zero) ? null : new uint_vector(cPtr, true); if (c_csharp_runPINVOKE.SWIGPendingException.Pending) { throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve(); } return(ret); }
public void TestWriteToBinaryBuffer() { run_metrics metrics = new run_metrics(); base_corrected_intensity_metrics expected_metrics = metrics.corrected_intensity_metric_set(); expected_metrics.set_version(3); uint_vector calledCounts1 = new uint_vector(new uint[] { 52, 1049523, 654071, 500476, 982989 }); float_vector correctedIntCalled1 = new float_vector(new float[] { 245, 252, 61, 235 }); expected_metrics.insert(new corrected_intensity_metric(7, 1114, 1, correctedIntCalled1, (calledCounts1))); uint_vector calledCounts2 = new uint_vector(new uint[] { 0, 1063708, 582243, 588028, 953132 }); float_vector correctedIntCalled2 = new float_vector(new float[] { 232, 257, 68, 228 }); expected_metrics.insert(new corrected_intensity_metric(7, 1114, 2, (correctedIntCalled2), (calledCounts2))); uint_vector calledCounts3 = new uint_vector(new uint[] { 0, 1022928, 617523, 594836, 951825 }); float_vector correctedIntCalled3 = new float_vector(new float[] { 227, 268, 68, 229 }); expected_metrics.insert(new corrected_intensity_metric(7, 1114, 3, (correctedIntCalled3), (calledCounts3))); byte[] expected_binary_data = new byte[metrics.calculate_buffer_size(metric_group.CorrectedInt)]; metrics.write_metrics_to_buffer(metric_group.CorrectedInt, expected_binary_data, (uint)expected_binary_data.Length); }
protected override void SetUp() { uint_vector calledCounts1 = new uint_vector(new uint[] { 52, 1049523, 654071, 500476, 982989 }); float_vector correctedIntCalled1 = new float_vector(new float[] { 245, 252, 61, 235 }); expected_metrics.Clear(); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 1, correctedIntCalled1, (calledCounts1))); uint_vector calledCounts2 = new uint_vector(new uint[] { 0, 1063708, 582243, 588028, 953132 }); float_vector correctedIntCalled2 = new float_vector(new float[] { 232, 257, 68, 228 }); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 2, (correctedIntCalled2), (calledCounts2))); uint_vector calledCounts3 = new uint_vector(new uint[] { 0, 1022928, 617523, 594836, 951825 }); float_vector correctedIntCalled3 = new float_vector(new float[] { 227, 268, 68, 229 }); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 3, (correctedIntCalled3), (calledCounts3))); int[] tmp = new int[] { 3, 34, 7, 0, 90, 4, 1, 0, -11, 0, -4, 0, 61, 0, -21, 0, 52, 0, 0, 0, -77, 3, 16, 0, -9, -6, 9, 0, -4, -94, 7, 0, -51, -1, 14, 0, 7, 0, 90, 4, 2, 0, -24, 0, 1, 1, 68, 0, -28, 0, 0, 0, 0, 0, 28, 59, 16, 0, 99, -30, 8, 0, -4, -8, 8, 0, 44, -117, 14, 0, 7, 0, 90, 4, 3, 0, -29, 0, 12, 1, 68, 0, -27, 0, 0, 0, 0, 0, -48, -101, 15, 0, 51, 108, 9, 0, -108, 19, 9, 0, 17, -122, 14, 0 }; SetupBuffers(tmp, Version); }
public uint_vector lanes() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_q_collapsed_metrics_lanes(swigCPtr), true); return(ret); }
protected override void SetUp() { uint_vector calledCounts1 = new uint_vector(new uint[]{52, 1049523, 654071, 500476, 982989}); ushort_vector correctedIntCalled1 = new ushort_vector(new ushort[]{245, 252, 61, 235}); expected_metrics.Clear(); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 1, correctedIntCalled1, (calledCounts1))); uint_vector calledCounts2 = new uint_vector(new uint[]{0, 1063708, 582243, 588028, 953132}); ushort_vector correctedIntCalled2 = new ushort_vector(new ushort[]{232, 257, 68, 228}); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 2, (correctedIntCalled2), (calledCounts2))); uint_vector calledCounts3 = new uint_vector(new uint[]{0, 1022928, 617523, 594836, 951825}); ushort_vector correctedIntCalled3 = new ushort_vector(new ushort[]{227, 268, 68, 229}); expected_metrics.Add(new corrected_intensity_metric(7, 1114, 3, (correctedIntCalled3), (calledCounts3))); int[] tmp = new int[]{3, 34, 7, 0, 90, 4, 1, 0, -11, 0, -4, 0, 61, 0, -21, 0, 52, 0, 0, 0, -77, 3, 16, 0, -9, -6, 9, 0, -4, -94, 7, 0, -51, -1, 14, 0, 7, 0, 90, 4, 2, 0, -24, 0, 1, 1, 68, 0, -28, 0, 0, 0, 0, 0, 28, 59, 16, 0, 99, -30, 8, 0, -4, -8, 8, 0, 44, -117, 14, 0, 7, 0, 90, 4, 3, 0, -29, 0, 12, 1, 68, 0, -27, 0, 0, 0, 0, 0, -48, -101, 15, 0, 51, 108, 9, 0, -108, 19, 9, 0, 17, -122, 14, 0 }; SetupBuffers (tmp,Version); }
public uint_vector lanes() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_basecalling_metrics_lanes(swigCPtr), true); return(ret); }
public uint_vector cycles() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_extended_tile_metrics_cycles(swigCPtr), true); return(ret); }
public uint_vector qscoreHist() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.q_metric_qscoreHist__SWIG_1(swigCPtr), false); return(ret); }
public uint_vector lanes() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_registration_metrics_lanes(swigCPtr), true); return(ret); }
public uint_vector get_issues_for_entry() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.run_diagnostics_metric_get_issues_for_entry(swigCPtr), false); return(ret); }
public uint_vector confusion_matrix() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.alignment_metric_confusion_matrix(swigCPtr), false); return(ret); }
public uint_vector cycles() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_color_matrix_metrics_cycles(swigCPtr), true); return(ret); }
public uint_vector cycles() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_corrected_intensity_metrics_cycles(swigCPtr), true); return(ret); }
public corrected_intensity_metric(uint lane, uint tile, uint cycle, ushort average_cycle_intensity, float signal_to_noise, float_vector corrected_int_called, ushort_vector corrected_int_all, uint_vector called_counts) : this(c_csharp_metricsPINVOKE.new_corrected_intensity_metric__SWIG_2(lane, tile, cycle, average_cycle_intensity, signal_to_noise, float_vector.getCPtr(corrected_int_called), ushort_vector.getCPtr(corrected_int_all), uint_vector.getCPtr(called_counts)), true) { if (c_csharp_metricsPINVOKE.SWIGPendingException.Pending) { throw c_csharp_metricsPINVOKE.SWIGPendingException.Retrieve(); } }
public uint_vector lanes() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_run_diagnostics_metrics_lanes(swigCPtr), true); return(ret); }
public uint_vector cycles() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_dynamic_phasing_metrics_cycles(swigCPtr), true); return(ret); }
public uint_vector tile_numbers() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_error_metrics_tile_numbers(swigCPtr), true); return(ret); }
public uint_vector tile_numbers_for_lane(uint lane) { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_static_run_metrics_tile_numbers_for_lane(swigCPtr, lane), true); return(ret); }
public uint_vector mismatch_cluster_counts() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.error_metric_mismatch_cluster_counts(swigCPtr), false); return(ret); }
public uint_vector calledCounts() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.corrected_intensity_metric_calledCounts__SWIG_0(swigCPtr), false); return(ret); }
public uint_vector cycles() { uint_vector ret = new uint_vector(c_csharp_metricsPINVOKE.base_static_run_metrics_cycles(swigCPtr), true); return(ret); }
internal static global::System.Runtime.InteropServices.HandleRef getCPtr(uint_vector obj) { return((obj == null) ? new global::System.Runtime.InteropServices.HandleRef(null, global::System.IntPtr.Zero) : obj.swigCPtr); }