public void TestHeatMapIndexOutOfBoundsException()
{
heatmap_data heatmap = new heatmap_data();
try{
System.Console.WriteLine(heatmap.at(0, 0));
Assert.Fail("No exception thrown!");
}catch (Illumina.InterOp.Metrics.index_out_of_bounds_exception) {}
}
public void Heatmap()
{
int[] tmp = new int[] {
6, 34, 1, 7, 2, 10, 20, 25, 30, 35, 40, 9, 19, 24, 29, 34, 39, 40, 2, 14, 21, 27, 32, 36, 40
, 7, 0, 90, 4, 1, 0, 0, 0, 0, 0, -70, 22, 4, 0, -81, -49, 1, 0, -68, 16, 0, 0, 78, -86, 42, 0, 0, 0, 0, 0, 0, 0, 0, 0
, 7, 0, 90, 4, 2, 0, 0, 0, 0, 0, 75, -81, 3, 0, -96, -81, 0, 0, 76, 4, 0, 0, 112, 62, 44, 0, 0, 0, 0, 0, 0, 0, 0, 0
, 7, 0, 90, 4, 3, 0, 0, 0, 0, 0, -80, 60, 3, 0, -74, -46, 0, 0, -85, 1, 0, 0, -106, -112, 44, 0, 0, 0, 0, 0, 0, 0, 0, 0
};
byte[] expected_binary_data = new byte[tmp.Length];
for (int i = 0; i < expected_binary_data.Length; i++)
{
expected_binary_data[i] = (byte)tmp[i];
}
run_metrics run = new run_metrics();
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, run.q_metric_set());
filter_options options = new filter_options(tile_naming_method.FourDigit);
read_info_vector reads = new read_info_vector();
reads.Add(new read_info(1, 1, 26));
reads.Add(new read_info(2, 27, 76));
run.run_info(new info(
"",
"",
1,
new flowcell_layout(8, 2, 2, 36, 1, 1, new string_vector(), tile_naming_method.FourDigit),
new string_vector(),
new image_dimensions(),
reads
));
run.legacy_channel_update(instrument_type.HiSeq);
run.finalize_after_load();
uint row_count = c_csharp_plot.count_rows_for_heatmap(run);
uint col_count = c_csharp_plot.count_columns_for_heatmap(run);
var buffer = new float[row_count * col_count];
heatmap_data data = new heatmap_data();
c_csharp_plot.plot_qscore_heatmap(run, options, data, buffer);
Assert.AreEqual(data.row_count(), 3);
Assert.AreEqual(data.column_count(), 40);
heatmap_data data2 = new heatmap_data();
c_csharp_plot.plot_qscore_heatmap(run, options, data2);
for (uint row = 0; row < data.row_count(); row++)
{
for (uint col = 0; col < data.column_count(); col++)
{
Assert.AreEqual(buffer[row * data.column_count() + col], data2.at(row, col));
}
}
}
public void Heatmap()
{
int[] tmp = new int[]{
6,34,1,7,2,10,20,25,30,35,40,9,19,24,29,34,39,40,2,14,21,27,32,36,40
,7,0,90,4,1,0,0,0,0,0,-70,22,4,0,-81,-49,1,0,-68,16,0,0,78,-86,42,0,0,0,0,0,0,0,0,0
,7,0,90,4,2,0,0,0,0,0,75,-81,3,0,-96,-81,0,0,76,4,0,0,112,62,44,0,0,0,0,0,0,0,0,0
,7,0,90,4,3,0,0,0,0,0,-80,60,3,0,-74,-46,0,0,-85,1,0,0,-106,-112,44,0,0,0,0,0,0,0,0,0
};
byte[] expected_binary_data = new byte[tmp.Length];
for(int i=0;i<expected_binary_data.Length;i++) expected_binary_data[i] = (byte)tmp[i];
run_metrics run = new run_metrics();
c_csharp_comm.read_interop_from_buffer(expected_binary_data, (uint)expected_binary_data.Length, run.q_metric_set());
filter_options options = new filter_options(tile_naming_method.FourDigit);
read_info_vector reads = new read_info_vector();
reads.Add(new read_info(1, 1, 26));
reads.Add(new read_info(2, 27, 76));
run.run_info(new info(
"",
"",
1,
new flowcell_layout(8, 2, 2, 36, 1, 1, new string_vector(), tile_naming_method.FourDigit),
new string_vector(),
new image_dimensions(),
reads
));
run.legacy_channel_update(instrument_type.HiSeq);
run.finalize_after_load();
uint row_count = c_csharp_plot.count_rows_for_heatmap(run);
uint col_count = c_csharp_plot.count_columns_for_heatmap(run);
var buffer = new float[row_count*col_count];
heatmap_data data = new heatmap_data();
c_csharp_plot.plot_qscore_heatmap(run, options, data, buffer);
Assert.AreEqual(data.row_count(), 3);
Assert.AreEqual(data.column_count(), 40);
heatmap_data data2 = new heatmap_data();
c_csharp_plot.plot_qscore_heatmap(run, options, data2);
for(uint row=0;row<data.row_count();row++)
{
for(uint col=0;col<data.column_count();col++)
{
Assert.AreEqual(buffer[row*data.column_count()+col], data2.at(row,col));
}
}
}
public void TestHeatMapIndexOutOfBoundsException()
{
heatmap_data heatmap = new heatmap_data();
System.Console.WriteLine(heatmap.at(0, 0));
}
