private void hierarchicalTreeToolStripMenuItem_Click(object sender, EventArgs e)
{
FormForHierarchical WindowHierarchical = new FormForHierarchical(this.GlobalInfo);
WindowHierarchical.richTextBoxWarning.AppendText("Warning:\nHierarchical tree visualization is not adpated for large number of experiments !\nIt can rapidly generate out-of-memory exception!");
System.Windows.Forms.DialogResult Res = WindowHierarchical.ShowDialog();// MessageBox.Show("Hierarchical tree is not adpated for large number of experiments !\n It can rapidly generate out-of-memory exception!\n Proceed anyway ?", "Warning", MessageBoxButtons.YesNo, MessageBoxIcon.Warning);
if (Res != System.Windows.Forms.DialogResult.OK) return;
cDendoGram DendoGram = new cDendoGram(GlobalInfo, WindowHierarchical.radioButtonFullScreen.Checked, 1);
//cDendoGram DendoGram = new cDendoGram(GlobalInfo,
// CompleteScreening.ListPlatesActive[CompleteScreening.CurrentDisplayPlateIdx].CreateInstancesWithoutClass(),
// 1);
return;
}
private void correlationMatrixToolStripMenuItem1_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerTab DT = new cDesignerTab();
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
//ListWellsToProcess.AddRange(TmpPlate.ListActiveWells);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
cExtendedTable CorrelationMatrix = CM.GetOutPut();
weka.core.Instances Insts = CorrelationMatrix.CreateWekaInstances();
weka.clusterers.HierarchicalClusterer ClustererToReturn = new weka.clusterers.HierarchicalClusterer();
// string OptionDistance = " -N " + (int)Parameters.ListDoubleValues.Get("numericUpDownNumClasses").Value;
//string DistanceType = (string)Parameters.ListTextValues.Get("comboBoxDistance").Value;
//OptionDistance += " -A \"weka.core.";
//switch (DistanceType)
//{
// case "Euclidean":
// OptionDistance += "EuclideanDistance";
// break;
// case "Manhattan":
// OptionDistance += "ManhattanDistance";
// break;
// case "Chebyshev":
// OptionDistance += "ChebyshevDistance";
// break;
// default:
// break;
//}
//if (!(bool)Parameters.ListCheckValues.Get("checkBoxNormalize").Value)
// OptionDistance += " -D";
//OptionDistance += " -R ";
//OptionDistance += "first-last\"";
//string WekaOption = "-L " + (string)Parameters.ListTextValues.Get("comboBoxLinkType").Value + OptionDistance;
((weka.clusterers.HierarchicalClusterer)ClustererToReturn).setOptions(weka.core.Utils.splitOptions("-N 1 -L SINGLE -P -A \"weka.core.EuclideanDistance -R first-last\" "));
ClustererToReturn.buildClusterer(Insts);
//this.NumberOfClusters = ClustererToReturn.numberOfClusters();
cInfoForHierarchical IFH = new cInfoForHierarchical();
IFH.ListInstances = Insts;
cDendoGram DENDO = new cDendoGram(((weka.clusterers.HierarchicalClusterer)ClustererToReturn), IFH, GlobalInfo);
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
VHM.GetOutPut().Title = TmpPlate.GetName();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
// DT.SetInputData(VT.GetOutPut());
//cDesignerColumn DC = new cDesignerColumn();
//DC.SetInputData(VHM.GetOutPut());
//DC.SetInputData(VT.GetOutPut());
//DC.Run();
//cDisplayDesigner DD = new cDisplayDesigner();
// DD.SetInputData(VHM.GetOutPut());
// DD.Run();
cDisplayToWindow vD = new cDisplayToWindow();
vD.SetInputData(DT.GetOutPut());
vD.Title = "Pearson Correlation";
vD.Run();
vD.Display();
//ComputeAndDisplayCorrelationMatrix(false, true, null);
}
private void hierarchicalClusteringToolStripMenuItem1_Click(object sender, EventArgs e)
{
System.Windows.Forms.DialogResult Res = MessageBox.Show("Hierarchical tree is not adpated for large number of experiments !\n It can rapidly generate out-of-memory exception!\n Proceed anyway ?", "Warning", MessageBoxButtons.YesNo, MessageBoxIcon.Warning);
if (Res == System.Windows.Forms.DialogResult.No) return;
cDendoGram DendoGram = new cDendoGram(GlobalInfo, true);
return;
}
private void hierarchicalTreeToolStripMenuItem_Click(object sender, EventArgs e)
{
cDendoGram DendoGram = new cDendoGram(GlobalInfo, false);
}
private void ClickToDisplayHierarchicalTree(object sender, EventArgs e)
{
cDendoGram Dendogram = new cDendoGram(((HierarchicalClusterer)SelectedClusterer),null, null);
FormDendogram WindowForDendoGram = new FormDendogram(GlobalInfo);
WindowForDendoGram.CurrentDendo = Dendogram;
WindowForDendoGram.Show();
}