public ComprehensiveColonCancerProfileResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, ComprehensiveColonCancerProfile comprehensiveColonCancerProfile) { this.m_SpecimenOrder = accessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(comprehensiveColonCancerProfile.OrderedOnId); this.m_PanelSetOrderSurgical = (YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder)accessionOrder.PanelSetOrderCollection.GetSurgical(); this.m_SurgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(this.m_SpecimenOrder.SpecimenOrderId); bool restrictToOrderedOn = !comprehensiveColonCancerProfile.IncludeTestsPerformedOnOtherBlocks; YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest panelSetLynchSyndromeIHCPanel = new YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_LSEIHCIsOrdered = true; this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest panelSetMLH1 = new YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_MLHIsOrdered = true; this.m_PanelSetOrderMLH1MethylationAnalysis = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_BRAFV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_BRAFV600EKIsOrdered = true; this.m_BRAFV600EKTestOrder = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASStandardTest = new YellowstonePathology.Business.Test.KRASStandard.KRASStandardTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASStandardIsOrdered = true; this.m_KRASStandardTestOrder = (YellowstonePathology.Business.Test.KRASStandard.KRASStandardTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon23MutationTest = new KRASExon23Mutation.KRASExon23MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon23MutationIsOrdered = true; this.m_KRASExon23MutationTestOrder = (KRASExon23Mutation.KRASExon23MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon4MutationTest = new KRASExon4Mutation.KRASExon4MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon4MutationIsOrdered = true; this.m_KRASExon4MutationTestOrder = (KRASExon4Mutation.KRASExon4MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_NRASMutationAnalysisTest = new NRASMutationAnalysis.NRASMutationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_NRASMutationAnalysisIsOrdered = true; this.m_NRASMutationAnalysisTestOrder = (NRASMutationAnalysis.NRASMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_RASRAFPanelTest = new RASRAFPanel.RASRAFPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_RASRAFIsOrdered = true; this.m_RASRAFPanelTestOrder = (RASRAFPanel.RASRAFPanelTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } }
public ComprehensiveColonCancerProfileResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, ComprehensiveColonCancerProfile comprehensiveColonCancerProfile) { this.m_SpecimenOrder = accessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(comprehensiveColonCancerProfile.OrderedOnId); this.m_PanelSetOrderSurgical = (YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder)accessionOrder.PanelSetOrderCollection.GetSurgical(); this.m_SurgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(this.m_SpecimenOrder.SpecimenOrderId); bool restrictToOrderedOn = !comprehensiveColonCancerProfile.IncludeTestsPerformedOnOtherBlocks; YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest panelSetLynchSyndromeIHCPanel = new YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_LSEIHCIsOrdered = true; this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } else { YellowstonePathology.Business.Domain.PatientHistory patientHistory = YellowstonePathology.Business.Gateway.AccessionOrderGateway.GetPatientHistory(accessionOrder.PatientId); if(patientHistory.PanelSetIdExists(102) == true) { YellowstonePathology.Business.Domain.PatientHistoryResult patientHistoryResult = patientHistory.GetByPanelSetId(102); YellowstonePathology.Business.Test.AccessionOrder lseIHCAccessionOrder = Business.Persistence.DocumentGateway.Instance.GetAccessionOrderByMasterAccessionNo(patientHistoryResult.MasterAccessionNo); this.m_LSEIHCIsOrdered = true; this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)lseIHCAccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } } YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest panelSetMLH1 = new YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_MLHIsOrdered = true; this.m_PanelSetOrderMLH1MethylationAnalysis = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_BRAFV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_BRAFV600EKIsOrdered = true; this.m_BRAFV600EKTestOrder = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASStandardTest = new YellowstonePathology.Business.Test.KRASStandard.KRASStandardTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASStandardIsOrdered = true; this.m_KRASStandardTestOrder = (YellowstonePathology.Business.Test.KRASStandard.KRASStandardTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon23MutationTest = new KRASExon23Mutation.KRASExon23MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon23MutationIsOrdered = true; this.m_KRASExon23MutationTestOrder = (KRASExon23Mutation.KRASExon23MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon4MutationTest = new KRASExon4Mutation.KRASExon4MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon4MutationIsOrdered = true; this.m_KRASExon4MutationTestOrder = (KRASExon4Mutation.KRASExon4MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_NRASMutationAnalysisTest = new NRASMutationAnalysis.NRASMutationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_NRASMutationAnalysisIsOrdered = true; this.m_NRASMutationAnalysisTestOrder = (NRASMutationAnalysis.NRASMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_RASRAFPanelTest = new RASRAFPanel.RASRAFPanelTest(); if(accessionOrder.PanelSetOrderCollection.Exists(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_RASRAFIsOrdered = true; this.m_RASRAFPanelTestOrder = (RASRAFPanel.RASRAFPanelTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_SurgicalSpecimenCollection = new YellowstonePathology.Business.Test.Surgical.SurgicalSpecimenCollection(); foreach (YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder in accessionOrder.SpecimenOrderCollection) { YellowstonePathology.Business.Test.Surgical.SurgicalSpecimen surgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(specimenOrder.SpecimenOrderId); if (surgicalSpecimen != null) { this.m_SurgicalSpecimenCollection.Add(surgicalSpecimen); } } this.m_PanelSetOrderLynchSyndromeIHCCollection = new Collection<LynchSyndrome.PanelSetOrderLynchSyndromeIHC>(); this.m_MolecularTestOrderCollection = new PanelSetOrderCollection(); foreach(YellowstonePathology.Business.Test.PanelSetOrder panelSetOrder in accessionOrder.PanelSetOrderCollection) { if(panelSetOrder is YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC) { this.m_PanelSetOrderLynchSyndromeIHCCollection.Add((YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)panelSetOrder); } else { if(panelSetOrder is LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis || panelSetOrder is KRASStandard.KRASStandardTestOrder || panelSetOrder is KRASExon23Mutation.KRASExon23MutationTestOrder || panelSetOrder is KRASExon4Mutation.KRASExon4MutationTestOrder || panelSetOrder is BRAFV600EK.BRAFV600EKTestOrder || panelSetOrder is NRASMutationAnalysis.NRASMutationAnalysisTestOrder || panelSetOrder is RASRAFPanel.RASRAFPanelTestOrder) { this.m_MolecularTestOrderCollection.Add(panelSetOrder); } } } }
public ComprehensiveColonCancerProfileResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, ComprehensiveColonCancerProfile comprehensiveColonCancerProfile) { this.m_SpecimenOrder = accessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(comprehensiveColonCancerProfile.OrderedOnId); this.m_PanelSetOrderSurgical = (YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder)accessionOrder.PanelSetOrderCollection.GetSurgical(); this.m_SurgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(this.m_SpecimenOrder.SpecimenOrderId); bool restrictToOrderedOn = !comprehensiveColonCancerProfile.IncludeTestsPerformedOnOtherBlocks; YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest panelSetLynchSyndromeIHCPanel = new YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_LSEIHCIsOrdered = true; this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } else { YellowstonePathology.Business.Domain.PatientHistory patientHistory = YellowstonePathology.Business.Gateway.AccessionOrderGateway.GetPatientHistory(accessionOrder.PatientId); if (patientHistory.PanelSetIdExists(102) == true) { YellowstonePathology.Business.Domain.PatientHistoryResult patientHistoryResult = patientHistory.GetByPanelSetId(102); YellowstonePathology.Business.Test.AccessionOrder lseIHCAccessionOrder = Business.Persistence.DocumentGateway.Instance.GetAccessionOrderByMasterAccessionNo(patientHistoryResult.MasterAccessionNo); this.m_LSEIHCIsOrdered = true; if (this.m_PanelSetOrderSurgical.MasterAccessionNo == patientHistoryResult.MasterAccessionNo) { this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)lseIHCAccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } else { this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)lseIHCAccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(102); } this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } } YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest panelSetMLH1 = new YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_MLHIsOrdered = true; this.m_PanelSetOrderMLH1MethylationAnalysis = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_BRAFV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_BRAFV600EKIsOrdered = true; this.m_BRAFV600EKTestOrder = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASStandardTest = new YellowstonePathology.Business.Test.KRASStandard.KRASStandardTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASStandardIsOrdered = true; this.m_KRASStandardTestOrder = (YellowstonePathology.Business.Test.KRASStandard.KRASStandardTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon23MutationTest = new KRASExon23Mutation.KRASExon23MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon23MutationIsOrdered = true; this.m_KRASExon23MutationTestOrder = (KRASExon23Mutation.KRASExon23MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon4MutationTest = new KRASExon4Mutation.KRASExon4MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon4MutationIsOrdered = true; this.m_KRASExon4MutationTestOrder = (KRASExon4Mutation.KRASExon4MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_NRASMutationAnalysisTest = new NRASMutationAnalysis.NRASMutationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_NRASMutationAnalysisIsOrdered = true; this.m_NRASMutationAnalysisTestOrder = (NRASMutationAnalysis.NRASMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_RASRAFPanelTest = new RASRAFPanel.RASRAFPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_RASRAFIsOrdered = true; this.m_RASRAFPanelTestOrder = (RASRAFPanel.RASRAFPanelTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_SurgicalSpecimenCollection = new YellowstonePathology.Business.Test.Surgical.SurgicalSpecimenCollection(); foreach (YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder in accessionOrder.SpecimenOrderCollection) { YellowstonePathology.Business.Test.Surgical.SurgicalSpecimen surgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(specimenOrder.SpecimenOrderId); if (surgicalSpecimen != null) { this.m_SurgicalSpecimenCollection.Add(surgicalSpecimen); } } this.m_PanelSetOrderLynchSyndromeIHCCollection = new Collection <LynchSyndrome.PanelSetOrderLynchSyndromeIHC>(); this.m_MolecularTestOrderCollection = new PanelSetOrderCollection(); foreach (YellowstonePathology.Business.Test.PanelSetOrder panelSetOrder in accessionOrder.PanelSetOrderCollection) { if (panelSetOrder is YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC) { this.m_PanelSetOrderLynchSyndromeIHCCollection.Add((YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)panelSetOrder); } else { if (panelSetOrder is LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis || panelSetOrder is KRASStandard.KRASStandardTestOrder || panelSetOrder is KRASExon23Mutation.KRASExon23MutationTestOrder || panelSetOrder is KRASExon4Mutation.KRASExon4MutationTestOrder || panelSetOrder is BRAFV600EK.BRAFV600EKTestOrder || panelSetOrder is NRASMutationAnalysis.NRASMutationAnalysisTestOrder || panelSetOrder is RASRAFPanel.RASRAFPanelTestOrder) { this.m_MolecularTestOrderCollection.Add(panelSetOrder); } } } if (accessionOrder.PanelSetOrderCollection.Exists(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == false) { YellowstonePathology.Business.Domain.PatientHistory patientHistory = YellowstonePathology.Business.Gateway.AccessionOrderGateway.GetPatientHistory(accessionOrder.PatientId); if (patientHistory.PanelSetIdExists(102) == true) { YellowstonePathology.Business.Domain.PatientHistoryResult patientHistoryResult = patientHistory.GetByPanelSetId(102); YellowstonePathology.Business.Test.AccessionOrder lseIHCAccessionOrder = Business.Persistence.DocumentGateway.Instance.GetAccessionOrderByMasterAccessionNo(patientHistoryResult.MasterAccessionNo); this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)lseIHCAccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(102); this.m_PanelSetOrderLynchSyndromeIHCCollection.Add(m_PanelSetOrderLynchSyndromeIHC); } } }
public ComprehensiveColonCancerProfileResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder, ComprehensiveColonCancerProfile comprehensiveColonCancerProfile) { this.m_SpecimenOrder = accessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(comprehensiveColonCancerProfile.OrderedOnId); this.m_PanelSetOrderSurgical = (YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder)accessionOrder.PanelSetOrderCollection.GetSurgical(); this.m_SurgicalSpecimen = this.m_PanelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(this.m_SpecimenOrder.SpecimenOrderId); bool restrictToOrderedOn = !comprehensiveColonCancerProfile.IncludeTestsPerformedOnOtherBlocks; YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest panelSetLynchSyndromeIHCPanel = new YellowstonePathology.Business.Test.LynchSyndrome.LynchSyndromeIHCPanelTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_LSEIHCIsOrdered = true; this.m_PanelSetOrderLynchSyndromeIHC = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetLynchSyndromeIHCPanel.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); this.m_IHCResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(this.m_PanelSetOrderLynchSyndromeIHC.ResultCode); } YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest panelSetMLH1 = new YellowstonePathology.Business.Test.LynchSyndrome.MLH1MethylationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_MLHIsOrdered = true; this.m_PanelSetOrderMLH1MethylationAnalysis = (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderMLH1MethylationAnalysis)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetMLH1.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_BRAFV600EKTest = new YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_BRAFV600EKIsOrdered = true; this.m_BRAFV600EKTestOrder = (YellowstonePathology.Business.Test.BRAFV600EK.BRAFV600EKTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_BRAFV600EKTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASStandardTest = new YellowstonePathology.Business.Test.KRASStandard.KRASStandardTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASStandardIsOrdered = true; this.m_KRASStandardTestOrder = (YellowstonePathology.Business.Test.KRASStandard.KRASStandardTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASStandardTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon23MutationTest = new KRASExon23Mutation.KRASExon23MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon23MutationIsOrdered = true; this.m_KRASExon23MutationTestOrder = (KRASExon23Mutation.KRASExon23MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon23MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_KRASExon4MutationTest = new KRASExon4Mutation.KRASExon4MutationTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_KRASExon4MutationIsOrdered = true; this.m_KRASExon4MutationTestOrder = (KRASExon4Mutation.KRASExon4MutationTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_KRASExon4MutationTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_NRASMutationAnalysisTest = new NRASMutationAnalysis.NRASMutationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_NRASMutationAnalysisIsOrdered = true; this.m_NRASMutationAnalysisTestOrder = (NRASMutationAnalysis.NRASMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_NRASMutationAnalysisTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } this.m_RASRAFPanelTest = new RASRAFPanel.RASRAFPanelTest(); if(accessionOrder.PanelSetOrderCollection.Exists(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn) == true) { this.m_RASRAFIsOrdered = true; this.m_RASRAFPanelTestOrder = (RASRAFPanel.RASRAFPanelTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_RASRAFPanelTest.PanelSetId, comprehensiveColonCancerProfile.OrderedOnId, restrictToOrderedOn); } }
private void SetIHC(ComprehensiveColonCancerProfileResult comprehensiveColonCancerProfileResult) { XmlNode tableNode = this.m_ReportXml.SelectSingleNode("descendant::w:tbl[w:tr/w:tc/w:p/w:r/w:t='mlh1_result']", this.m_NameSpaceManager); XmlNode rowmlh1Node = tableNode.SelectSingleNode("descendant::w:tr[w:tc/w:p/w:r/w:t='mlh1_result']", this.m_NameSpaceManager); XmlNode rowmsh2Node = tableNode.SelectSingleNode("descendant::w:tr[w:tc/w:p/w:r/w:t='msh2_result']", this.m_NameSpaceManager); XmlNode rowmsh6Node = tableNode.SelectSingleNode("descendant::w:tr[w:tc/w:p/w:r/w:t='msh6_result']", this.m_NameSpaceManager); XmlNode rowpms2Node = tableNode.SelectSingleNode("descendant::w:tr[w:tc/w:p/w:r/w:t='pms2_result']", this.m_NameSpaceManager); XmlNode insertAfterRow = rowmlh1Node; foreach (YellowstonePathology.Business.Test.LynchSyndrome.PanelSetOrderLynchSyndromeIHC testOrder in comprehensiveColonCancerProfileResult.PanelSetOrderLynchSyndromeIHCCollection) { YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = null; if (testOrder.MasterAccessionNo == this.m_AccessionOrder.MasterAccessionNo) { specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(testOrder.OrderedOnId); } else { YellowstonePathology.Business.Test.AccessionOrder lseIHCAccessionOrder = Business.Persistence.DocumentGateway.Instance.GetAccessionOrderByMasterAccessionNo(testOrder.MasterAccessionNo); specimenOrder = lseIHCAccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(testOrder.OrderedOnId); } YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = specimenOrder.AliquotOrderCollection.GetByAliquotOrderId(testOrder.OrderedOnId); YellowstonePathology.Business.Test.LynchSyndrome.IHCResult ihcResult = YellowstonePathology.Business.Test.LynchSyndrome.IHCResult.CreateResultFromResultCode(testOrder.ResultCode); XmlNode rowmlh1NodeClone = rowmlh1Node.Clone(); rowmlh1NodeClone.SelectSingleNode("descendant::w:r[w:t='mlh1_result']/w:t", this.m_NameSpaceManager).InnerText = ihcResult.MLH1Result.Description; rowmlh1NodeClone.SelectSingleNode("descendant::w:r[w:t='ihc_reportno']/w:t", this.m_NameSpaceManager).InnerText = testOrder.ReportNo; rowmlh1NodeClone.SelectSingleNode("descendant::w:r[w:t='ihc_block_label']/w:t", this.m_NameSpaceManager).InnerText = aliquotOrder.Label; tableNode.InsertAfter(rowmlh1NodeClone, insertAfterRow); XmlNode rowpms2NodeClone = rowpms2Node.Clone(); rowpms2NodeClone.SelectSingleNode("descendant::w:r[w:t='pms2_result']/w:t", this.m_NameSpaceManager).InnerText = ihcResult.PMS2Result.Description; tableNode.InsertAfter(rowpms2NodeClone, rowmlh1NodeClone); XmlNode rowmsh2NodeClone = rowmsh2Node.Clone(); rowmsh2NodeClone.SelectSingleNode("descendant::w:r[w:t='msh2_result']/w:t", this.m_NameSpaceManager).InnerText = ihcResult.MSH2Result.Description; tableNode.InsertAfter(rowmsh2NodeClone, rowpms2NodeClone); XmlNode rowmsh6NodeClone = rowmsh6Node.Clone(); rowmsh6NodeClone.SelectSingleNode("descendant::w:r[w:t='msh6_result']/w:t", this.m_NameSpaceManager).InnerText = ihcResult.MSH6Result.Description; tableNode.InsertAfter(rowmsh6NodeClone, rowmsh2NodeClone); insertAfterRow = rowmsh6NodeClone; } if (comprehensiveColonCancerProfileResult.PanelSetOrderLynchSyndromeIHCCollection.Count > 0) { this.DeleteRow("mlh1_result"); this.DeleteRow("msh2_result"); this.DeleteRow("msh6_result"); this.DeleteRow("pms2_result"); } else { base.ReplaceText("ihc_reportno", "Not Included"); base.ReplaceText("mlh1_result", "Not Included"); base.ReplaceText("msh2_result", "Not Included"); base.ReplaceText("msh6_result", "Not Included"); base.ReplaceText("pms2_result", "Not Included"); } }