public bool WriteExperimentFile_WaveGuide(string filename, List <AnalysisContainer> analysisList)
{
bool success = true;
if (File.Exists(filename))
{
MessageBoxResult result = MessageBox.Show("File: " + filename + " already exists! Do you want to over write it?", "File Already Exists",
MessageBoxButton.YesNo, MessageBoxImage.Exclamation);
switch (result)
{
case MessageBoxResult.Yes:
File.Delete(filename);
break;
case MessageBoxResult.No:
success = false;
m_lastErrorString = "File already exists";
break;
}
}
if (success)
{
try
{
string delimiter = "\t"; // \t = tab
FileStream fs = new FileStream(filename, FileMode.CreateNew, FileAccess.Write);
using (StreamWriter sw = new StreamWriter(fs))
{
// Start writing HEADER
sw.WriteLine("<HEADER>");
DateTime dt = m_experiment.TimeStamp;
sw.WriteLine("Date" + delimiter + dt.Year.ToString() + "-" + dt.Month.ToString() + "-" + dt.Day.ToString());
sw.WriteLine("Time" + delimiter + dt.Hour.ToString() + ":" + dt.Minute.ToString() + ":" + dt.Second.ToString());
sw.WriteLine("Instrument" + delimiter + "Panoptic");
sw.WriteLine("ProtocolName" + delimiter + m_method.Description);
sw.WriteLine("AssayPlateBarcode" + delimiter + m_plate.Barcode);
success = m_wgDB.GetAllExperimentCompoundPlatesForExperiment(m_experiment.ExperimentID);
if (success)
{
foreach (ExperimentCompoundPlateContainer ecPlate in m_wgDB.m_experimentCompoundPlateList)
{
sw.WriteLine("AddPlateBarcode" + delimiter + ecPlate.Barcode);
}
}
ObservableCollection <ExperimentIndicatorContainer> expIndicatorList = new ObservableCollection <ExperimentIndicatorContainer>();
foreach (AnalysisContainer ac in analysisList)
{
ExperimentIndicatorContainer expIndicator;
success = m_wgDB.GetExperimentIndicator(ac.ExperimentIndicatorID, out expIndicator);
if (success && expIndicator != null)
{
// make sure this experiment indicator isn't already in the list
bool alreadyInList = false;
foreach (ExperimentIndicatorContainer expCont in expIndicatorList)
{
if (expIndicator.ExperimentIndicatorID == expCont.ExperimentIndicatorID)
{
alreadyInList = true;
break;
}
}
if (!alreadyInList)
{
sw.WriteLine("Indicator" + delimiter +
expIndicator.Description + delimiter +
expIndicator.ExcitationFilterDesc + delimiter +
expIndicator.EmissionFilterDesc + delimiter +
expIndicator.Exposure.ToString() + delimiter +
expIndicator.Gain.ToString());
expIndicatorList.Add(expIndicator);
}
}
}
success = m_wgDB.GetAllExperimentIndicatorsForExperiment(m_experiment.ExperimentID, out expIndicatorList);
if (success)
{
foreach (ExperimentIndicatorContainer expIndicator in expIndicatorList)
{
}
}
sw.WriteLine("NumRows" + delimiter + m_plateType.Rows.ToString());
sw.WriteLine("NumCols" + delimiter + m_plateType.Cols.ToString());
List <EventMarkerContainer> eventMarkerList;
success = m_wgDB.GetAllEventMarkersForExperiment(m_experiment.ExperimentID, out eventMarkerList);
if (success)
{
foreach (EventMarkerContainer eventMarker in eventMarkerList)
{
string timeString = String.Format("{0:0.000}", (float)eventMarker.SequenceNumber / 1000);
sw.WriteLine("Event" + delimiter + eventMarker.Name + delimiter +
eventMarker.Description + delimiter +
timeString);
}
}
sw.WriteLine("Operator" + delimiter + m_user.Username + delimiter +
m_user.Lastname + delimiter +
m_user.Firstname);
sw.WriteLine("Project" + delimiter + m_project.Description);
sw.WriteLine("</HEADER>");
// END writing HEADER
if (success)
{
foreach (AnalysisContainer analysis in analysisList)
{
ExperimentIndicatorContainer expIndicator;
success = m_wgDB.GetExperimentIndicator(analysis.ExperimentIndicatorID, out expIndicator);
sw.WriteLine("<INDICATOR_DATA" + delimiter + expIndicator.Description + delimiter + ">");
// START write column headers
sw.Write("Time" + delimiter);
StringBuilder builder = new StringBuilder();
for (int r = 0; r < m_plateType.Rows; r++)
{
for (int c = 0; c < m_plateType.Cols; c++)
{
builder.Append((char)(65 + r)).Append(c + 1).Append(delimiter);
}
}
builder.Remove(builder.Length - delimiter.Length, delimiter.Length); // remove last delimiter
sw.WriteLine(builder.ToString());
// END write column headers
// START writing data frames
success = m_wgDB.GetAllAnalysisFramesForAnalysis(analysis.AnalysisID);
if (success)
{
foreach (AnalysisFrameContainer aFrame in m_wgDB.m_analysisFrameList)
{
string timeString = String.Format("{0:0.000}", (float)aFrame.SequenceNumber / 1000);
sw.Write(timeString + delimiter);
string[] values = aFrame.ValueString.Split(',');
foreach (string val in values)
{
sw.Write(val + delimiter);
}
sw.WriteLine("");
}
}
// END writing data frames
sw.WriteLine("</INDICATOR_DATA>");
}
}
}
if (!success)
{
m_lastErrorString = m_wgDB.GetLastErrorMsg();
}
} // end try
catch (Exception e)
{
success = false;
m_lastErrorString = e.Message;
}
}
return(success);
} // end function