public void loadIMFResultsAndThenExport()
{
IsosResultUtilities iru = new IsosResultUtilities();
List <IsosResult> results = iru.getIMFResults(imfIsosFolder, 500, 600);
UIMFIsosExporter exporter = new UIMFIsosExporter(Path.Combine(imfIsosFolder, "mergedIsosResults.csv"));
ResultCollection rc = new ResultCollection(new IMFRun());
rc.ResultList = results;
exporter.Export(rc);
}
public void smallExportTest1()
{
Project project = Project.getInstance();
//TODO: add project parameters (for summing)
project.RunCollection.Add(new UIMFRun(uimfFilepath, 1200, 1202, 250, 300));
Task msGen = new UIMF_MSGenerator(200, 2000);
DeconToolsV2.Peaks.clsPeakProcessorParameters detectorParams = new DeconToolsV2.Peaks.clsPeakProcessorParameters();
detectorParams.PeakBackgroundRatio = 3;
detectorParams.PeakFitType = DeconToolsV2.Peaks.PEAK_FIT_TYPE.QUADRATIC;
detectorParams.SignalToNoiseThreshold = 3;
detectorParams.ThresholdedData = false;
Task peakDetector = new DeconToolsPeakDetector(detectorParams);
Task decon = new HornDeconvolutor();
Task driftTimeExtractor = new UIMFDriftTimeExtractor();
project.TaskCollection.TaskList.Add(msGen);
project.TaskCollection.TaskList.Add(peakDetector);
project.TaskCollection.TaskList.Add(decon);
project.TaskCollection.TaskList.Add(driftTimeExtractor);
TaskController controller = new UIMF_TaskController(project.TaskCollection);
controller.Execute(project.RunCollection);
UIMFIsosExporter isosExporter = new UIMFIsosExporter(uimfIsosExporterTest1output);
isosExporter.Export(project.RunCollection[0].ResultCollection);
}
public void readInBinaryDataAndExport()
{
UIMFIsosExporter isosExporter = new UIMFIsosExporter(uimfIsosExporterTest2output);
isosExporter.Export(binaryUIMFData, false);
}
