public bool Open(int numPort)
{
try
{
port.PortName = ports[numPort];
port.Open();
if (port.IsOpen)
{
SendString("REQUEST ?");
string answer = ReadLine();
if (answer == "S8-53")
{
typeDisplay = TypeDisplay.Monochrome;
}
else if (answer == "S8-53/1")
{
typeDisplay = TypeDisplay.Color;
}
else
{
typeDisplay = TypeDisplay.None;
}
}
}
catch (SystemException)
{
port.Close();
}
return(port.IsOpen);
}
public override void DisplayMol(ColorDisplay c, TypeDisplay t,int f)
{
type = t;
color = c;
frame = f;
switch (t) {
case TypeDisplay.Points : DisplayMolPoints();break;
//case TypeDisplay.Lines : DisplayMolLines();break;
case TypeDisplay.VDW : DisplayMolPoints();break;
default:DisplayMolPoints(); break;
}
}
public override void DisplayMol(ColorDisplay c, TypeDisplay t,int f)
{
type = t;
color = c;
frame = f;
switch (t) {
case TypeDisplay.Points : DisplayMolPointCloud();break;
case TypeDisplay.Lines : DisplayMolLines();break;
//case TypeDisplay.CPK : DisplayMolPointCloud();DisplayMolLines();break;
case TypeDisplay.Surface : DisplayMolSurface();break;
case TypeDisplay.Trace : DisplayMolTrace();break;
default: break;
}
}
public override void DisplayMol(ColorDisplay c, TypeDisplay t,int f)
{
type = t;
color = c;
frame = f;
switch (t) {
case TypeDisplay.Points :
if(!Main.options.oldUnityObj)
DisplayMolSpheres();
else
DisplayMolSpheresOld();
break;
case TypeDisplay.VDW :
if(!Main.options.oldUnityObj)
DisplayMolSpheres();
else
DisplayMolSpheresOld();
break;
case TypeDisplay.Lines :
if(!Main.options.oldUnityObj)
DisplayMolCylinders();
else
DisplayMolCylindersOld();
break;
case TypeDisplay.CPK :
if(!Main.options.oldUnityObj){
DisplayMolSpheres();DisplayMolCylinders();
}
else{
DisplayMolSpheresOld();DisplayMolCylindersOld();
}
break;
case TypeDisplay.Trace :DisplayMolTubes();break;
default:
if(!Main.options.oldUnityObj)
DisplayMolSpheres();
else
DisplayMolSpheresOld();
break;
}
}
public bool Open(int numPort)
{
try
{
port.PortName = ports[numPort];
port.Open();
if(port.IsOpen)
{
SendString("REQUEST ?");
string answer = ReadLine();
if(answer == "S8-53")
{
typeDisplay = TypeDisplay.Monochrome;
}
else if(answer == "S8-53/1")
{
typeDisplay = TypeDisplay.Color;
}
else
{
typeDisplay = TypeDisplay.None;
}
}
}
catch(SystemException)
{
port.Close();
}
return port.IsOpen;
}
public Molecule(Molecule m)
: base(m)
{
chains = new List<Chain> ();
residues = new List<Residue> ();
atoms = new List<Atom> ();
for (int i = 0; i<m.Chains.Count; i++) {
Chain c= new Chain(m.Chains[i]);
this.Chains.Add(c);
for (int j = 0; j<m.Chains[i].Residues.Count; j++) {
Residue r = new Residue(m.Chains[i].Residues[j],c);
this.Chains[i].Residues.Add(r);
this.Residues.Add(r);
for (int k =0; k<m.Chains[i].Residues[j].Atoms.Count; k++) {
Atom a = new Atom(m.Chains[i].Residues[j].Atoms[k],r,c);
this.Chains[i].Residues[j].Atoms.Add(a);
this.Chains[i].Atoms.Add(a);
this.Atoms.Add(a);
}
}
}
bonds = new List<int[]> (m.Bonds);
chainsBonds = new List<List<int>> (m.chainsBonds);
color = m.color;
type = m.type;
render = m.render;
select = m.select;
energies = m.energies;
}
public abstract void DisplayMol(ColorDisplay color,TypeDisplay type,int frame);
