public HalfLifeRowDataForm(Workspace workspace) : base(workspace)
{
InitializeComponent();
var viewContext = new TopographViewContext(workspace, typeof(HalfLifeCalculator.ProcessedRowData), new HalfLifeCalculator.ProcessedRowData[0]);
bindingSource1.SetViewContext(viewContext);
}
public PeptideAnalysesForm(Workspace workspace) : base(workspace)
{
InitializeComponent();
TabText = Name = Title;
_peptideAnalyses = new PeptideAnalysisRows(Workspace.PeptideAnalyses);
var viewContext = new TopographViewContext(Workspace, typeof(PeptideAnalysisRow), _peptideAnalyses)
{
DeleteHandler = new PeptideAnalysisDeleteHandler(this),
};
var idPathPeptideAnalysis = PropertyPath.Root.Property("PeptideAnalysis");
var idPathPeptide = idPathPeptideAnalysis.Property("Peptide");
var viewSpec = new ViewSpec()
.SetName(AbstractViewContext.DefaultViewName)
.SetColumns(
new[]
{
new ColumnSpec(PropertyPath.Root.Property("Peptide")),
new ColumnSpec(PropertyPath.Root.Property("ValidationStatus")),
new ColumnSpec(idPathPeptideAnalysis.Property("Note")),
new ColumnSpec(idPathPeptide.Property("ProteinName")),
new ColumnSpec(idPathPeptide.Property("ProteinDescription")),
new ColumnSpec(idPathPeptide.Property("MaxTracerCount")),
new ColumnSpec(PropertyPath.Root.Property("FileAnalysisCount")),
new ColumnSpec(PropertyPath.Root.Property("MinScore")),
new ColumnSpec(PropertyPath.Root.Property("MaxScore")),
});
bindingListSource1.SetViewContext(viewContext);
bindingListSource1.RowSource = _peptideAnalyses;
}
public ResultsPerGroupForm(Workspace workspace) : base(workspace)
{
InitializeComponent();
foreach (var evviesFilter in Enum.GetValues(typeof(EvviesFilterEnum)))
{
comboEvviesFilter.Items.Add(evviesFilter);
}
comboEvviesFilter.SelectedIndex = 0;
bindingSource1.SetViewContext(_viewContext = new TopographViewContext(Workspace, typeof(DisplayRow), new DisplayRow[0], new[] { GetDefaultViewSpec(cbxByProtein.Checked) }));
HalfLifeSettings = Settings.Default.HalfLifeSettings;
}
private void btnRequery_Click(object sender, EventArgs e)
{
var halfLifeCalculator = new HalfLifeCalculator(Workspace, HalfLifeSettings)
{
ByFile = cbxGroupByFile.Checked,
};
using (var longWaitDialog = new LongWaitDialog(TopLevelControl, "Calculating Half Lives"))
{
var longOperationBroker = new LongOperationBroker(halfLifeCalculator.Run, longWaitDialog);
if (!longOperationBroker.LaunchJob())
{
return;
}
}
bool byCohort = cbxGroupByCohort.Checked;
bool byTimePoint = cbxGroupByTimePoint.Checked;
bool bySample = cbxGroupBySample.Checked;
bool byFile = cbxGroupByFile.Checked;
var displayRows = new List <DisplayRow>();
foreach (var resultRow in halfLifeCalculator.ResultRows)
{
var displayRow = new DisplayRow(halfLifeCalculator, resultRow);
var rowDatasByCohort = new Dictionary <GroupKey, List <HalfLifeCalculator.ProcessedRowData> >();
foreach (var halfLife in resultRow.HalfLives)
{
if (resultRow.HalfLives.Count > 1 && string.IsNullOrEmpty(halfLife.Key) != byCohort)
{
continue;
}
foreach (var rowData in halfLife.Value.FilteredRowDatas)
{
GroupKey cohortKey = new GroupKey(
byCohort ? rowData.RawRowData.MsDataFile.Cohort : null,
byTimePoint ? rowData.RawRowData.MsDataFile.TimePoint : null,
bySample ? rowData.RawRowData.MsDataFile.Sample : null,
byFile ? rowData.RawRowData.MsDataFile.Name : null);
List <HalfLifeCalculator.ProcessedRowData> list;
if (!rowDatasByCohort.TryGetValue(cohortKey, out list))
{
list = new List <HalfLifeCalculator.ProcessedRowData>();
rowDatasByCohort.Add(cohortKey, list);
}
list.Add(rowData);
}
}
foreach (var cohortRowDatas in rowDatasByCohort)
{
displayRow.Results.Add(cohortRowDatas.Key, new GroupResult(this, displayRow, cohortRowDatas.Key, new ResultData(cohortRowDatas.Value)));
}
displayRows.Add(displayRow);
}
var viewInfo = bindingSource1.ViewInfo;
var dataSchema = new TopographDataSchema(Workspace);
if (viewInfo == null || "default" == viewInfo.Name)
{
viewInfo = new ViewInfo(ColumnDescriptor.RootColumn(dataSchema, typeof(DisplayRow)),
GetDefaultViewSpec(halfLifeCalculator.ByProtein));
}
var viewContext = new TopographViewContext(Workspace, typeof(DisplayRow), displayRows,
GetDefaultViewSpec(halfLifeCalculator.ByProtein));
bindingSource1.SetViewContext(viewContext, viewInfo);
bindingSource1.RowSource = displayRows;
dataGridViewSummary.Rows.Clear();
SetSummary("Tracer %", displayRows.Select(dr => dr.Results).SelectMany(r => r.Values
.Select(cohortResult => cohortResult.GetResultData().TracerPercentByArea)));
SetSummary("Precursor Enrichment", displayRows.Select(dr => dr.Results).SelectMany(r => r.Values
.Select(cohortResult => cohortResult.GetResultData().IndPrecursorEnrichment)));
SetSummary("Turnover", displayRows.Select(dr => dr.Results).SelectMany(r => r.Values
.Select(cohortResult => cohortResult.GetResultData().IndTurnover)));
SetSummary("Area Under Curve", displayRows.Select(dr => dr.Results).SelectMany(r => r.Values
.Select(cohortResult => cohortResult.GetResultData().AreaUnderCurve)));
}
