public void NewFromData(string subdir)
{
var siformat = Directory.GetFiles(subdir, "*.siformat");
TextFileDefinition prefile = new TextFileDefinition();
if (siformat.Length > 0)
{
prefile.ReadFromFile(siformat[0]);
bool bFound = false;
prefile.ForEach(m =>
{
if (m.PropertyName.Equals("TumorStage"))
{
m.PropertyName = "TumorStatus";
bFound = true;
}
if (m.PropertyName.Equals("Metastasis"))
{
m.PropertyName = "MetastasisStatus";
bFound = true;
}
});
if (bFound)
{
prefile.WriteToFile(siformat[0]);
}
}
var map = new RawSampleInfoReader().ReadDescriptionFromDirectory(subdir);
lastDirectory = subdir;
lastFile = String.Empty;
var files = new HashSet <string>(from f in CelFile.GetCelFiles(subdir, false)
select GeoUtils.GetGsmName(f));
Dictionary <string, HashSet <string> > headers = new Dictionary <string, HashSet <string> >();
foreach (var m in map)
{
var gsm = m.Key.ToLower();
if (!files.Contains(gsm))
{
continue;
}
var curmap = m.Value;
foreach (var entry in curmap)
{
if (!headers.ContainsKey(entry.Key))
{
headers[entry.Key] = new HashSet <string>();
}
headers[entry.Key].UnionWith(entry.Value);
}
}
ClearDataSource();
items.Clear();
foreach (var part in headers)
{
items.Add(new FileDefinitionItem()
{
AnnotationName = part.Key,
Example = (from v in part.Value
orderby v
select v).Merge(";")
});
}
foreach (var olditem in prefile)
{
if (!string.IsNullOrEmpty(olditem.PropertyName))
{
var newitem = items.Find(m => m.AnnotationName.Equals(olditem.AnnotationName));
if (newitem != null)
{
newitem.PropertyName = olditem.PropertyName;
}
}
}
items.DefaultValues.Clear();
foreach (var olddv in prefile.DefaultValues)
{
if (propertyNames.Contains(olddv.PropertyName))
{
items.DefaultValues.Add(new DefaultValue()
{
PropertyName = olddv.PropertyName,
Value = olddv.Value
});
}
}
items.Sort((m1, m2) => m1.AnnotationName.CompareTo(m2.AnnotationName));
UpdateDataSource();
this.Text = title + " - " + Path.GetFileName(subdir);
}
public void NewFromData(string subdir)
{
try
{
var siformat = Directory.GetFiles(subdir, "*.siformat");
TextFileDefinition prefile = new TextFileDefinition();
if (siformat.Length > 0)
{
prefile.ReadFromFile(siformat[0]);
}
var map = new RawSampleInfoReader().ReadDescriptionFromDirectory(subdir);
LastDirectory = subdir;
lastFile = String.Empty;
var files = new HashSet <string>(from f in CelFile.GetCelFiles(subdir, false)
select GeoUtils.GetGsmName(f));
Dictionary <string, HashSet <string> > headers = new Dictionary <string, HashSet <string> >();
foreach (var m in map)
{
var gsm = m.Key.ToUpper();
if (!files.Contains(gsm))
{
continue;
}
var curmap = m.Value;
foreach (var entry in curmap)
{
if (!headers.ContainsKey(entry.Key))
{
headers[entry.Key] = new HashSet <string>();
}
headers[entry.Key].UnionWith(entry.Value);
}
}
ClearDataSource();
items.Clear();
foreach (var part in headers)
{
items.Add(new FileDefinitionItem()
{
AnnotationName = part.Key,
Example = (from v in part.Value
orderby v
select v).Merge(";")
});
}
foreach (var olditem in prefile)
{
if (!string.IsNullOrEmpty(olditem.PropertyName))
{
var newitem = items.Find(m => m.AnnotationName.Equals(olditem.AnnotationName));
if (newitem != null)
{
newitem.PropertyName = olditem.PropertyName;
}
}
}
items.DefaultValues.Clear();
items.Sort((m1, m2) => m1.AnnotationName.CompareTo(m2.AnnotationName));
UpdateDataSource();
label1.Text = "Annotation/property mapping - " + Path.GetFileName(subdir);
dlgOpenDirectory.SelectedPath = subdir;
dlgSaveFormatFile.FileName = Path.Combine(subdir, Path.GetFileName(subdir) + ".siformat");
}
catch (Exception ex)
{
MessageBox.Show(this, ex.Message, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
}
}