public void Correct(string prefix, IProteinSet proteinSet)
{
int count = 0;
for (int i = 0; i < proteinIndex.Length; i++)
{
if (T07SearchEngineEnhancement.IsReverseProtein(proteinSet.GetName(proteinIndex[i]), prefix))
{
count++;
}
}
if (count == 0 || count == proteinIndex.Length)
{
return;
}
List <int> result = new List <int>();
for (int i = 0; i < proteinIndex.Length; i++)
{
if (!proteinSet.GetName(proteinIndex[i]).StartsWith(prefix))
{
result.Add(proteinIndex[i]);
}
}
proteinIndex = result.ToArray();
}
public bool HasReverseProteins(string revstring)
{
for (int i = 0; i < proteinIds.Length; i++)
{
if (T07SearchEngineEnhancement.IsReverseProtein(proteinIds[i], revstring))
{
return(true);
}
}
return(false);
}
public bool HasOnlyReverseHits(string reverseStr, IProteinSet proteinSet)
{
for (int i = 0; i < proteinIndex.Length; i++)
{
if (!T07SearchEngineEnhancement.IsReverseProtein(proteinSet.GetName(proteinIndex[i]), reverseStr))
{
return(false);
}
}
return(true);
}