private static SrmDocument InitWiffDocument(TestFilesDir testFilesDir) { const LabelAtoms labelAtoms = LabelAtoms.C13 | LabelAtoms.N15; List <StaticMod> heavyMods = new List <StaticMod> { new StaticMod("Heavy K", "K", ModTerminus.C, null, labelAtoms, null, null), new StaticMod("Heavy R", "R", ModTerminus.C, null, labelAtoms, null, null), }; SrmSettings settings = SrmSettingsList.GetDefault(); settings = settings.ChangePeptideModifications(mods => mods.ChangeHeavyModifications(heavyMods)); SrmDocument doc = new SrmDocument(settings); IdentityPath selectPath; string path = testFilesDir.GetTestPath("051309_transition list.csv"); // Product m/z out of range var docError = doc; List <MeasuredRetentionTime> irtPeptides; List <SpectrumMzInfo> librarySpectra; List <TransitionImportErrorInfo> errorList; var inputs = new MassListInputs(path) { FormatProvider = CultureInfo.InvariantCulture, Separator = TextUtil.SEPARATOR_CSV }; docError.ImportMassList(inputs, null, out selectPath, out irtPeptides, out librarySpectra, out errorList); Assert.AreEqual(errorList.Count, 1); AssertEx.AreComparableStrings(TextUtil.SpaceSeparate(Resources.MassListRowReader_CalcTransitionExplanations_The_product_m_z__0__is_out_of_range_for_the_instrument_settings__in_the_peptide_sequence__1_, Resources.MassListRowReader_CalcPrecursorExplanations_Check_the_Instrument_tab_in_the_Transition_Settings), errorList[0].ErrorMessage, 2); Assert.AreEqual(errorList[0].Column, 1); Assert.AreEqual(errorList[0].Row, 19); doc = doc.ChangeSettings(settings.ChangeTransitionInstrument(inst => inst.ChangeMaxMz(1800))); inputs = new MassListInputs(path) { FormatProvider = CultureInfo.InvariantCulture, Separator = TextUtil.SEPARATOR_CSV }; doc = doc.ImportMassList(inputs, null, out selectPath); AssertEx.IsDocumentState(doc, 2, 9, 9, 18, 54); return(doc); }