private void closeAllChromatogramsMenuItem_Click(object sender, EventArgs e)
{
SkylineWindow.CloseAllChromatograms();
}
protected override void DoTest()
{
var testFilesDir = TestFilesDir;
var skyFile = "test_b.sky";
var basename = "289_97";
var sourceData = TestFilesDir.GetTestPath(basename + ExtensionTestContext.ExtMzml);
string docPath;
var doc = InitHighReplicateCountDocument(testFilesDir, skyFile, out docPath);
Settings.Default.ImportResultsSimultaneousFiles =
(int)MultiFileLoader.ImportResultsSimultaneousFileOptions
.many; // use maximum threads for multiple file import
var listChromatograms = new List <ChromatogramSet>();
var filenames = new List <string>();
var TOO_MANY_FILES = Skyline.SkylineWindow.MAX_GRAPH_CHROM * 2;
int count;
for (count = 0; count < TOO_MANY_FILES; count++)
{
var fname = TestFilesDir.GetTestPath(GetReplicateNameFromIndex(count));
filenames.Add(fname);
if (count != Skyline.SkylineWindow.MAX_GRAPH_CHROM)
{
File.Copy(sourceData, fname);
}
var path = MsDataFileUri.Parse(fname);
listChromatograms.Add(AssertResult.FindChromatogramSet(doc, path) ??
new ChromatogramSet(path.GetFileName().Replace('.', '_'), new[] { path }));
}
var docResults = doc.ChangeMeasuredResults(new MeasuredResults(listChromatograms));
Assert.IsTrue(SkylineWindow.SetDocument(docResults, doc));
var document = WaitForDocumentLoaded();
float tolerance = (float)document.Settings.TransitionSettings.Instrument.MzMatchTolerance;
foreach (var pair in document.MoleculePrecursorPairs)
{
for (var f = 0; f < filenames.Count; f++)
{
ChromatogramGroupInfo[] chromGroupInfo;
Assert.IsTrue(document.Settings.MeasuredResults.TryLoadChromatogram(f, pair.NodePep, pair.NodeGroup,
tolerance,
true, out chromGroupInfo));
}
}
WaitForClosedAllChromatogramsGraph();
// We expect 0th display to be R0, then as we move on to high undisplayed chromatograms we expect r0 to be replaced with R100, R1 with R101 etc
var graphChromatograms = SkylineWindow.GraphChromatograms.ToList();
Assert.IsTrue(graphChromatograms.Any(g => g.NameSet.Equals("R0_mzML")));
var oldest = graphChromatograms[0].NameSet;
var newest = "distinct_mzML"; // This replicate should have a different peak
Assert.IsFalse(graphChromatograms.Any(g => g.NameSet.Equals(newest)));
// Now select a graph not currently displayed
RunUI(() => SkylineWindow.SelectedResultsIndex = Skyline.SkylineWindow.MAX_GRAPH_CHROM);
WaitForGraphs();
graphChromatograms = SkylineWindow.GraphChromatograms.ToList();
Assert.IsFalse(graphChromatograms.Any(g => g.NameSet.Equals(oldest)));
Assert.IsTrue(graphChromatograms.Any(g => g.NameSet.Equals(newest)));
RunUI(() => SkylineWindow.ArrangeGraphsTiled()); // Arrange so that all are fully visible, so we can use .Visible in test below
// Now close all, then open them back up again with ctrl-up/ctrl-down hotkeys, and verify that we see the ones we expect
RunUI(() => SkylineWindow.CloseAllChromatograms());
WaitForClosedAllChromatogramsGraph();
// Now run through the replicates
for (count = 0; count < TOO_MANY_FILES; count++)
{
RunUI(() => SkylineWindow.SelectedResultsIndex = count);
var name = GetReplicateNameFromIndex(count).Replace(@".", @"_");
WaitForConditionUI(() => SkylineWindow.GraphChromatograms.Any(g => g.NameSet.Equals(name) && g.Visible));
graphChromatograms = SkylineWindow.GraphChromatograms.ToList();
for (var index = 0; index < TOO_MANY_FILES; index++)
{
name = GetReplicateNameFromIndex(index).Replace(@".", @"_");
var visible = graphChromatograms.Any(g => g.NameSet.Equals(name) && g.Visible);
var shouldBeVisible = (index > count - Skyline.SkylineWindow.MAX_GRAPH_CHROM) && (index <= count);
Assert.IsTrue(visible == shouldBeVisible);
if (shouldBeVisible)
{
// Make sure it's showing the right data
Assert.IsTrue(graphChromatograms.First(g => g.NameSet.Equals(name)).FilePath.ToString().Contains(GetReplicateNameFromIndex(index)));
}
}
}
}
