public TumorNormalEnrichmentRunner(TumorNormalEnrichmentInput input) { _tumorNormalOptions = input.TumorNormalOptions; _normalBam = input.NormalBam; _manifest = input.Manifest; CommonOptions = input.CommonOptions; SingleSampleCommonOptions = input.SingleSampleCommonOptions; }
public TumorNormalEnrichmentRunner(CommonOptions commonOptions, SingleSampleCommonOptions singleSampleCommonOptions, TumorNormalOptions tumorNormalOptions, IFileLocation normalBam, IFileLocation manifest) { _tumorNormalOptions = tumorNormalOptions; _normalBam = normalBam; _manifest = manifest; CommonOptions = commonOptions; SingleSampleCommonOptions = singleSampleCommonOptions; }
public TumorNormalWgsRunner(CommonOptions commonOptions, SingleSampleCommonOptions singleSampleCommonOptions, TumorNormalOptions tumorNormalOptions) { _tumorNormalOptions = tumorNormalOptions; CommonOptions = commonOptions; SingleSampleCommonOptions = singleSampleCommonOptions; }
public TumorNormalWgsRunner(TumorNormalWgsInput input) { _tumorNormalOptions = input.TumorNormalOptions; CommonOptions = input.CommonOptions; SingleSampleCommonOptions = input.SingleSampleCommonOptions; }
public GermlineWgsRunner(CommonOptions commonOptions, SingleSampleCommonOptions singleSampleCommonOptions, IFileLocation bam) { _bam = bam; CommonOptions = commonOptions; SingleSampleCommonOptions = singleSampleCommonOptions; }
public SomaticEnrichmentRunner(CommonOptions commonOptions, SingleSampleCommonOptions singleSampleCommonOptions, SomaticEnrichmentOptions somaticEnrichmentOptions) { _somaticEnrichmentOptions = somaticEnrichmentOptions; CommonOptions = commonOptions; SingleSampleCommonOptions = singleSampleCommonOptions; }