public IEnumerable <SchemaNode> GetSchemaNodes(int implementationGuideId, string parentType = null, bool includeAttributes = true)
{
if (!CheckPoint.Instance.GrantViewImplementationGuide(implementationGuideId))
{
throw new AuthorizationException("You do not have permission to view this implementation guide");
}
ImplementationGuide ig = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
List <SimpleSchema.SchemaObject> children;
if (!string.IsNullOrEmpty(parentType))
{
schema = schema.GetSchemaFromContext(parentType);
children = schema.Children;
}
else
{
children = schema.Children[0].Children;
}
var ret = (from s in children
where includeAttributes || !s.IsAttribute
select new SchemaNode()
{
Context = s.IsAttribute ? "@" + s.Name : s.Name,
Conformance = s.Conformance,
Cardinality = s.Cardinality,
DataType = s.DataType,
HasChildren = s.Children.Where(y => includeAttributes || !y.IsAttribute).Count() > 0
});
return(ret);
}
public IHttpActionResult UpdateStructureDefinition(
[FromBody] StructureDefinition strucDef,
[FromUri] string bookmark)
{
Template existingTemplate = this.tdb.Templates.SingleOrDefault(y => y.Bookmark.ToLower().Trim() == bookmark.ToLower().Trim());
// Make sure the profile exists
if (existingTemplate == null)
{
return(CreateErrorResponse(App_GlobalResources.TrifoliaLang.TemplateNotFoundMessageFormat));
}
if (!CheckPoint.Instance.GrantEditTemplate(existingTemplate.Id))
{
throw new UnauthorizedAccessException();
}
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionImporter importer = new StructureDefinitionImporter(this.tdb, uri.Scheme, uri.Authority);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
Template updatedTemplate;
try
{
User author = CheckPoint.Instance.GetUser(this.tdb);
updatedTemplate = importer.Convert(strucDef, existingTemplate, author);
}
catch (Exception ex)
{
return(CreateErrorResponse(ex.Message, OperationOutcome.IssueType.Exception));
}
if (existingTemplate == null)
{
this.tdb.Templates.Add(updatedTemplate);
}
this.tdb.SaveChanges();
string location = string.Format("{0}://{1}/api/FHIR3/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
updatedTemplate.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, updatedTemplate.ImplementationGuideType);
schema = schema.GetSchemaFromContext(updatedTemplate.PrimaryContextType);
StructureDefinition updatedStrucDef = exporter.Convert(updatedTemplate, schema);
return(Content <Resource>((existingTemplate == null ? HttpStatusCode.Created : HttpStatusCode.OK), updatedStrucDef, headers));
}
public HttpResponseMessage ExportXML(XMLSettingsModel model)
{
if (model == null)
{
throw new ArgumentNullException("model");
}
if (model.ImplementationGuideId == 0)
{
throw new ArgumentNullException("model.ImplementationGuideId");
}
ImplementationGuide ig = this.tdb.ImplementationGuides.SingleOrDefault(y => y.Id == model.ImplementationGuideId);
if (ig == null)
{
throw new Exception("Implementation guide with id " + model.ImplementationGuideId + " was not found");
}
List <Template> templates = this.tdb.Templates.Where(y => model.TemplateIds.Contains(y.Id)).ToList();
IGSettingsManager igSettings = new IGSettingsManager(this.tdb, model.ImplementationGuideId);
string fileName = string.Format("{0}.xml", ig.GetDisplayName(true));
string export = string.Empty;
bool returnJson = Request.Headers.Accept.Count(y => y.MediaType == "application/json") == 1;
bool includeVocabulary = model.IncludeVocabulary == true;
var igTypePlugin = IGTypePluginFactory.GetPlugin(ig.ImplementationGuideType);
var schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
if (model.XmlType == XMLSettingsModel.ExportTypes.Proprietary)
{
export = igTypePlugin.Export(tdb, schema, ExportFormats.Proprietary, igSettings, model.SelectedCategories, templates, includeVocabulary, returnJson);
}
else if (model.XmlType == XMLSettingsModel.ExportTypes.DSTU)
{
export = igTypePlugin.Export(tdb, schema, ExportFormats.TemplatesDSTU, igSettings, model.SelectedCategories, templates, includeVocabulary, returnJson);
}
else if (model.XmlType == XMLSettingsModel.ExportTypes.FHIR)
{
export = igTypePlugin.Export(this.tdb, schema, ExportFormats.FHIR, igSettings, model.SelectedCategories, templates, includeVocabulary, returnJson);
}
else if (model.XmlType == XMLSettingsModel.ExportTypes.JSON)
{
ImplementationGuideController ctrl = new ImplementationGuideController(this.tdb);
var dataModel = ctrl.GetViewData(model.ImplementationGuideId, null, null, true);
// Serialize the data to JSON
var jsonSerializer = new System.Web.Script.Serialization.JavaScriptSerializer();
jsonSerializer.MaxJsonLength = Int32.MaxValue;
export = jsonSerializer.Serialize(dataModel);
// Set the filename to JSON
fileName = string.Format("{0}.json", ig.GetDisplayName(true));
}
byte[] data = System.Text.ASCIIEncoding.UTF8.GetBytes(export);
return(GetExportResponse(fileName, data));
}
public IHttpActionResult CreateStructureDefinition(
[FromBody] StructureDefinition strucDef)
{
if (!string.IsNullOrEmpty(strucDef.Id))
{
OperationOutcome error = new OperationOutcome();
error.Issue.Add(new OperationOutcome.IssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Error,
Diagnostics = App_GlobalResources.TrifoliaLang.CreateFHIR2TemplateFailedDuplicateId
});
return(Content <OperationOutcome>(HttpStatusCode.BadRequest, error));
}
var foundProfile = this.tdb.Templates.SingleOrDefault(y => y.Oid == strucDef.Url);
if (foundProfile != null)
{
OperationOutcome oo = new OperationOutcome()
{
Issue = new List <OperationOutcome.IssueComponent> {
new OperationOutcome.IssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Error,
Code = OperationOutcome.IssueType.Duplicate,
Diagnostics = "A StructureDefinition with the same url already exists. To update, use PUT."
}
}
};
return(Content <OperationOutcome>(HttpStatusCode.Created, oo));
}
var template = CreateTemplate(strucDef);
this.tdb.SaveChanges();
string location = string.Format("{0}://{1}/api/FHIR3/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
template.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
StructureDefinition newStrucDef = exporter.Convert(template, schema);
return(Content <StructureDefinition>(HttpStatusCode.Created, newStrucDef, headers));
}
public IHttpActionResult GetTemplate(
[FromUri] string templateId,
[FromUri(Name = "_summary")] SummaryType?summary = null)
{
Template template = this.tdb.Templates.SingleOrDefault(y => y.Oid == this.Request.RequestUri.AbsoluteUri || y.Id.ToString() == templateId);
// Return an operation outcome indicating that the profile was not found
if (template == null)
{
OperationOutcome oo = new OperationOutcome();
oo.Issue.Add(new OperationOutcome.OperationOutcomeIssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Fatal,
Diagnostics = "Profile was not found"
});
return(Content <OperationOutcome>(HttpStatusCode.NotFound, oo));
}
// Redirect the user to the Trifolia web interface if an acceptable format is text/html, and no format or summary was specified
if (Request.Headers.Accept.Any(y => y.MediaType == "text/html") && summary == null)
{
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", Request.RequestUri.Scheme + "://" + Request.RequestUri.Authority + "/TemplateManagement/View/Id/" + template.Id);
OperationOutcome redirectOutcome = new OperationOutcome();
redirectOutcome.Issue.Add(new OperationOutcome.OperationOutcomeIssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Information,
Diagnostics = "Detecting browser-based request, redirecting to Trifolia web interface."
});
return(Content <OperationOutcome>(HttpStatusCode.Redirect, redirectOutcome, headers));
}
if (template.TemplateType.ImplementationGuideType != this.implementationGuideType)
{
throw new FormatException(App_GlobalResources.TrifoliaLang.TemplateNotFHIRSTU3);
}
if (!CheckPoint.Instance.GrantViewTemplate(template.Id))
{
throw new UnauthorizedAccessException();
}
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
StructureDefinition strucDef = exporter.Convert(template, schema, summary);
return(Content <StructureDefinition>(HttpStatusCode.OK, strucDef));
}
public string GetConstraintDataType(DB.TemplateConstraint aConstraint, string aConstraintXpath)
{
var templateType = aConstraint.Template.TemplateType;
string context = !string.IsNullOrEmpty(aConstraint.Template.PrimaryContextType) ?
aConstraint.Template.PrimaryContextType : templateType.RootContextType;
var schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, templateType.ImplementationGuideType);
schema = schema.GetSchemaFromContext(context);
SimpleSchema.SchemaObject lSchemaObject = schema.FindFromPath(aConstraintXpath);
return(lSchemaObject.DataType);
}
public HttpResponseMessage GetImplementationGuide(
int implementationGuideId,
[FromUri(Name = "_format")] string format = null,
[FromUri(Name = "_summary")] fhir_stu3.Hl7.Fhir.Rest.SummaryType?summary = null)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
var implementationGuide = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, implementationGuide.ImplementationGuideType);
ImplementationGuideExporter exporter = new ImplementationGuideExporter(this.tdb, schema, uri.Scheme, uri.Authority);
FhirImplementationGuide response = exporter.Convert(implementationGuide, summary);
return(Shared.GetResponseMessage(this.Request, format, response));
}
public HttpResponseMessage GetImplementationGuides(
[FromUri(Name = "_format")] string format = null,
[FromUri(Name = "_summary")] fhir_stu3.Hl7.Fhir.Rest.SummaryType?summary = null,
[FromUri(Name = "_include")] string include = null,
[FromUri(Name = "_id")] int?implementationGuideId = null,
[FromUri(Name = "name")] string name = null)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, this.implementationGuideType);
ImplementationGuideExporter exporter = new ImplementationGuideExporter(this.tdb, schema, uri.Scheme, uri.Authority);
var bundle = exporter.GetImplementationGuides(summary, include, implementationGuideId, name);
return(Shared.GetResponseMessage(this.Request, format, bundle));
}
public IEnumerable <string> GetDerivedTypes(int implementationGuideId, string dataType)
{
if (!CheckPoint.Instance.GrantViewImplementationGuide(implementationGuideId))
{
throw new AuthorizationException("You do not have permission to view this implementation guide");
}
ImplementationGuide ig = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
var derivedTypes = schema.GetDerivedTypes(dataType);
if (derivedTypes != null)
{
return(derivedTypes.Where(y => y.Name != dataType).Select(y => y.Name));
}
return(null);
}
public IHttpActionResult CreateStructureDefinition(
[FromBody] StructureDefinition strucDef)
{
var foundProfile = this.tdb.Templates.SingleOrDefault(y => y.Oid == strucDef.Url);
if (foundProfile != null)
{
return(CreateErrorResponse(App_GlobalResources.TrifoliaLang.StructureDefinitionSameUrlExists, OperationOutcome.IssueType.Duplicate));
}
Template template;
try
{
User author = CheckPoint.Instance.GetUser(this.tdb);
template = CreateTemplate(strucDef, author);
this.tdb.SaveChanges();
}
catch (Exception ex)
{
return(CreateErrorResponse(ex.Message, OperationOutcome.IssueType.Exception));
}
string location = string.Format("{0}://{1}/api/FHIR3/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
template.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
StructureDefinition newStrucDef = exporter.Convert(template, schema);
return(Content <StructureDefinition>(HttpStatusCode.Created, newStrucDef, headers));
}
public IHttpActionResult UpdateStructureDefinition(
[FromBody] StructureDefinition strucDef,
[FromUri] int templateId)
{
Template existingTemplate = this.tdb.Templates.SingleOrDefault(y => y.Id == templateId);
if (!CheckPoint.Instance.GrantEditTemplate(templateId))
{
throw new UnauthorizedAccessException();
}
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionImporter importer = new StructureDefinitionImporter(this.tdb, uri.Scheme, uri.Authority);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
Template updatedTemplate = importer.Convert(strucDef, existingTemplate);
if (existingTemplate == null)
{
this.tdb.Templates.AddObject(updatedTemplate);
}
this.tdb.SaveChanges();
string location = string.Format("{0}://{1}/api/FHIR2/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
updatedTemplate.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, updatedTemplate.ImplementationGuideType);
schema = schema.GetSchemaFromContext(updatedTemplate.PrimaryContextType);
StructureDefinition updatedStrucDef = exporter.Convert(updatedTemplate, schema);
return(Content <Resource>((existingTemplate == null ? HttpStatusCode.Created : HttpStatusCode.OK), updatedStrucDef, headers));
}
public IEnumerable <SchemaNode> GetSchemaNodesByType(int implementationGuideId, string parentType = null, string path = null, bool includeAttributes = true)
{
if (!CheckPoint.Instance.GrantViewImplementationGuide(implementationGuideId))
{
throw new AuthorizationException("You do not have permission to view this implementation guide");
}
ImplementationGuide ig = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
List <SimpleSchema.SchemaObject> children = null;
if (schema == null)
{
Logging.Log.For(this).Error("Request for schema nodes by type did not find a schema for implementation guide id " + implementationGuideId);
return(new List <SchemaNode>());
}
if (!string.IsNullOrEmpty(parentType))
{
schema = schema.GetSchemaFromContext(parentType);
if (schema != null)
{
children = schema.Children;
}
else
{
Logging.Log.For(this).Warn("Schema for implementation guide type " + ig.ImplementationGuideType.Name + " did not find a parent type of " + parentType);
}
}
else
{
children = schema.Children[0].Children;
}
if (children == null)
{
return(new List <SchemaNode>());
}
if (!string.IsNullOrEmpty(path))
{
string[] pathSplit = path.Split('/');
foreach (string nextPath in pathSplit)
{
var child = children.SingleOrDefault(y => y.Name == nextPath);
if (child == null)
{
throw new ArgumentException("Path specified could not be found within type");
}
children = child.Children;
}
}
var ret = (from s in children
where includeAttributes || !s.IsAttribute
select new SchemaNode()
{
Context = s.IsAttribute ? "@" + s.Name : s.Name,
Conformance = s.Conformance,
Cardinality = s.Cardinality,
DataType = s.DataType,
IsChoice = s.IsChoice,
HasChildren = s.Children.Where(y => includeAttributes || !y.IsAttribute).Count() > 0
});
return(ret);
}
public HttpResponseMessage Export(ExportSettingsModel model)
{
ImplementationGuide ig = this.tdb.ImplementationGuides.SingleOrDefault(y => y.Id == model.ImplementationGuideId);
if (model.TemplateIds == null)
{
model.TemplateIds = ig.GetRecursiveTemplates(this.tdb, categories: model.SelectedCategories.ToArray()).Select(y => y.Id).ToList();
}
List <Template> templates = this.tdb.Templates.Where(y => model.TemplateIds.Contains(y.Id)).ToList();
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
IIGTypePlugin igTypePlugin = IGTypePluginFactory.GetPlugin(ig.ImplementationGuideType);
IGSettingsManager igSettings = new IGSettingsManager(this.tdb, model.ImplementationGuideId);
bool isCDA = ig.ImplementationGuideType.SchemaURI == "urn:hl7-org:v3";
string fileName;
byte[] export;
string contentType = null;
switch (model.ExportFormat)
{
case ExportFormats.FHIR_Build_Package:
case ExportFormats.FHIR_Bundle:
case ExportFormats.Native_XML:
case ExportFormats.Templates_DSTU_XML:
string fileExtension = model.ReturnJson ? "json" : "xml";
contentType = model.ReturnJson ? JSON_MIME_TYPE : XML_MIME_TYPE;
if (model.ExportFormat == ExportFormats.FHIR_Build_Package)
{
fileExtension = "zip";
contentType = ZIP_MIME_TYPE;
}
fileName = string.Format("{0}.{1}", ig.GetDisplayName(true), fileExtension);
var pluginExporter = igTypePlugin.GetExporter();
export = pluginExporter.Export(this.tdb, schema, model.ExportFormat, igSettings, model.SelectedCategories, templates, model.IncludeVocabulary, model.ReturnJson);
break;
case ExportFormats.Snapshot_JSON:
ImplementationGuideController ctrl = new ImplementationGuideController(this.tdb);
var dataModel = ctrl.GetViewData(model.ImplementationGuideId, null, null, true);
// Serialize the data to JSON
var jsonSerializer = new System.Web.Script.Serialization.JavaScriptSerializer();
jsonSerializer.MaxJsonLength = Int32.MaxValue;
export = System.Text.Encoding.UTF8.GetBytes(jsonSerializer.Serialize(dataModel));
// Set the filename to JSON
fileName = string.Format("{0}.json", ig.GetDisplayName(true));
contentType = JSON_MIME_TYPE;
break;
case ExportFormats.Microsoft_Word_DOCX:
ImplementationGuideGenerator generator = new ImplementationGuideGenerator(this.tdb, model.ImplementationGuideId, model.TemplateIds);
fileName = string.Format("{0}.docx", ig.GetDisplayName(true));
ExportSettings lConfig = new ExportSettings();
lConfig.Use(c =>
{
c.GenerateTemplateConstraintTable = model.TemplateTables == TemplateTableOptions.ConstraintOverview || model.TemplateTables == TemplateTableOptions.Both;
c.GenerateTemplateContextTable = model.TemplateTables == TemplateTableOptions.Context || model.TemplateTables == TemplateTableOptions.Both;
c.GenerateDocTemplateListTable = model.DocumentTables == DocumentTableOptions.List || model.DocumentTables == DocumentTableOptions.Both;
c.GenerateDocContainmentTable = model.DocumentTables == DocumentTableOptions.Containment || model.DocumentTables == DocumentTableOptions.Both;
c.AlphaHierarchicalOrder = model.TemplateSortOrder == TemplateSortOrderOptions.AlphaHierarchically;
c.DefaultValueSetMaxMembers = model.ValueSetTables ? model.MaximumValueSetMembers : 0;
c.GenerateValueSetAppendix = model.ValueSetAppendix;
c.IncludeXmlSamples = model.IncludeXmlSample;
c.IncludeChangeList = model.IncludeChangeList;
c.IncludeTemplateStatus = model.IncludeTemplateStatus;
c.IncludeNotes = model.IncludeNotes;
c.IncludeVolume1 = model.IncludeVolume1;
c.SelectedCategories = model.SelectedCategories;
c.GenerateRequiredAndOptionalSectionsTable = model.GenerateRequiredAndOptionalSectionsTable;
c.DocumentTemplateTypeId = model.DocumentTemplateTypeId;
c.SectionTemplateTypeId = model.SectionTemplateTypeId;
});
if (model.ValueSetOid != null && model.ValueSetOid.Count > 0)
{
Dictionary <string, int> valueSetMemberMaximums = new Dictionary <string, int>();
for (int i = 0; i < model.ValueSetOid.Count; i++)
{
if (valueSetMemberMaximums.ContainsKey(model.ValueSetOid[i]))
{
continue;
}
valueSetMemberMaximums.Add(model.ValueSetOid[i], model.ValueSetMaxMembers[i]);
}
lConfig.ValueSetMaxMembers = valueSetMemberMaximums;
}
generator.BuildImplementationGuide(lConfig, ig.ImplementationGuideType.GetPlugin());
export = generator.GetDocument();
contentType = DOCX_MIME_TYPE;
break;
case ExportFormats.Schematron_SCH:
string schematronResult = SchematronGenerator.Generate(tdb, ig, model.IncludeCustomSchematron, VocabularyOutputType.Default, model.VocabularyFileName, templates, model.SelectedCategories, model.DefaultSchematron);
export = ASCIIEncoding.UTF8.GetBytes(schematronResult);
fileName = string.Format("{0}.sch", ig.GetDisplayName(true));
contentType = XML_MIME_TYPE;
if (model.IncludeVocabulary)
{
using (ZipFile zip = new ZipFile())
{
zip.AddEntry(fileName, export);
NativeTerminologyExporter nativeTermExporter = new NativeTerminologyExporter(this.tdb);
byte[] vocData = nativeTermExporter.GetExport(ig.Id, model.MaximumValueSetMembers, this.GetExportEncoding(model));
string vocFileName = string.Format("{0}", model.VocabularyFileName);
//Ensuring the extension is present in case input doesn't have it
if (vocFileName.IndexOf(".xml") == -1)
{
vocFileName += ".xml";
}
zip.AddEntry(vocFileName, vocData);
using (MemoryStream ms = new MemoryStream())
{
zip.Save(ms);
fileName = string.Format("{0}.zip", ig.GetDisplayName(true));
contentType = ZIP_MIME_TYPE;
export = ms.ToArray();
}
}
}
break;
case ExportFormats.Vocabulary_XLSX:
fileName = string.Format("{0}.xlsx", ig.GetDisplayName(true));
contentType = XLSX_MIME_TYPE;
ExcelExporter excelExporter = new ExcelExporter(this.tdb);
export = excelExporter.GetSpreadsheet(ig.Id, model.MaximumValueSetMembers);
break;
case ExportFormats.Vocbulary_Single_SVS_XML:
fileName = string.Format("{0}_SingleSVS.xml", ig.GetDisplayName(true));
contentType = XML_MIME_TYPE;
SingleSVSExporter ssvsExporter = new SingleSVSExporter(this.tdb);
export = ssvsExporter.GetExport(ig.Id, model.MaximumValueSetMembers, this.GetExportEncoding(model));
break;
case ExportFormats.Vocabulary_Multiple_SVS_XML:
fileName = string.Format("{0}_MultipleSVS.xml", ig.GetDisplayName(true));
contentType = XML_MIME_TYPE;
MultipleSVSExporter msvsExporter = new MultipleSVSExporter(this.tdb);
export = msvsExporter.GetExport(ig.Id, model.MaximumValueSetMembers, this.GetExportEncoding(model));
break;
case ExportFormats.Vocabulary_Native_XML:
fileName = string.Format("{0}_MultipleSVS.xml", ig.GetDisplayName(true));
contentType = XML_MIME_TYPE;
NativeTerminologyExporter nativeExporter = new NativeTerminologyExporter(this.tdb);
export = nativeExporter.GetExport(ig.Id, model.MaximumValueSetMembers, this.GetExportEncoding(model));
break;
case ExportFormats.Web_HTML:
// Get the data from the API controller
HtmlExporter exporter = new HtmlExporter(this.tdb);
var templateIds = templates.Select(y => y.Id).ToArray();
var htmlDataModel = exporter.GetExportData(ig.Id, null, templateIds, model.IncludeInferred);
IGController igController = new IGController(this.tdb);
var downloadPackage = igController.GetDownloadPackage(ig, JsonConvert.SerializeObject(htmlDataModel));
export = downloadPackage.Content;
fileName = downloadPackage.FileName;
contentType = ZIP_MIME_TYPE;
break;
case ExportFormats.Vocbulary_Bundle_FHIR_XML:
ValueSetExporter vsExporter = new ValueSetExporter(this.tdb);
var bundle = vsExporter.GetImplementationGuideValueSets(ig);
if (model.ReturnJson)
{
export = fhir_stu3.Hl7.Fhir.Serialization.FhirSerializer.SerializeResourceToJsonBytes(bundle);
fileName = string.Format("{0}_fhir_voc.json", ig.GetDisplayName(true));
contentType = JSON_MIME_TYPE;
}
else
{
export = fhir_stu3.Hl7.Fhir.Serialization.FhirSerializer.SerializeResourceToXmlBytes(bundle);
fileName = string.Format("{0}_fhir_voc.xml", ig.GetDisplayName(true));
contentType = XML_MIME_TYPE;
}
break;
default:
throw new NotSupportedException();
}
return(GetExportResponse(fileName, contentType, export));
}
public SaveResponse Save(SaveModel model)
{
SaveResponse response = new SaveResponse();
int? templateId = null;
using (IObjectRepository tdb = DBContext.CreateAuditable(CheckPoint.Instance.UserName, CheckPoint.Instance.HostAddress))
{
if (!CheckPoint.Instance.GrantEditImplementationGuide(model.Template.OwningImplementationGuideId))
{
throw new AuthorizationException("You do not have authorization to edit templates associated with the selected implementation guide");
}
if (model.Template.Id != null && !CheckPoint.Instance.GrantEditTemplate(model.Template.Id.Value))
{
throw new AuthorizationException("You do not have permission to edit this template");
}
Template template = SaveTemplate(tdb, model.Template);
// Remove the specified constraints before creating/updating the other constraints
this.RemoveConstraints(tdb, model.RemovedConstraints);
// Create/update constraints
this.SaveConstraints(tdb, template, model.Constraints);
var allNumbers = (from t in tdb.Templates
join tc in tdb.TemplateConstraints on t.Id equals tc.TemplateId
where t.OwningImplementationGuideId == template.OwningImplementationGuideId
select new { tc.Id, tc.Number });
var duplicateNumbers = (from tcc in template.ChildConstraints
join an in allNumbers on tcc.Number equals an.Number
where tcc.Id != an.Id
select tcc.Number);
if (duplicateNumbers.Count() > 0)
{
response.Error = string.Format("The following constraints have duplicate numbers: {0}", string.Join(", ", duplicateNumbers));
}
else
{
tdb.SaveChanges();
templateId = template.Id;
}
}
if (templateId != null)
{
using (IObjectRepository tdb = DBContext.Create())
{
var template = tdb.Templates.Single(y => y.Id == templateId);
response.TemplateId = template.Id;
response.AuthorId = template.AuthorId;
response.Constraints = GetConstraints(tdb, template);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
var validator = new RIMValidator(tdb);
response.ValidationResults = (from vr in validator.ValidateTemplate(template, schema)
select new
{
ConstraintNumber = vr.ConstraintNumber,
Level = vr.Level.ToString(),
Message = vr.Message
});
}
}
return(response);
}
public IHttpActionResult GetTemplates(
[FromUri(Name = "_id")] int?templateId = null,
[FromUri(Name = "name")] string name = null,
[FromUri(Name = "_summary")] SummaryType?summary = null)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
var templates = this.tdb.Templates.Where(y => y.TemplateType.ImplementationGuideType == this.implementationGuideType);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
if (!CheckPoint.Instance.IsDataAdmin)
{
User currentUser = CheckPoint.Instance.GetUser(this.tdb);
templates = (from t in templates
join vtp in this.tdb.ViewTemplatePermissions on t.Id equals vtp.TemplateId
where vtp.UserId == currentUser.Id
select t);
}
if (templateId != null)
{
templates = templates.Where(y => y.Id == templateId);
}
if (!string.IsNullOrEmpty(name))
{
templates = templates.Where(y => y.Name.ToLower().Contains(name.ToLower()));
}
Bundle bundle = new Bundle()
{
Type = Bundle.BundleType.BatchResponse
};
foreach (var template in templates)
{
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
bool isMatch = true;
StructureDefinition strucDef = exporter.Convert(template, schema, summary);
var fullUrl = string.Format("{0}://{1}/api/FHIR2/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
template.Id);
// Skip adding the structure definition to the response if a criteria rules it out
foreach (var queryParam in this.Request.GetQueryNameValuePairs())
{
if (queryParam.Key == "_id" || queryParam.Key == "name" || queryParam.Key == "_format" || queryParam.Key == "_summary")
{
continue;
}
if (queryParam.Key.Contains("."))
{
throw new NotSupportedException(App_GlobalResources.TrifoliaLang.FHIRSearchCriteriaNotSupported);
}
var propertyDef = strucDef.GetType().GetProperty(queryParam.Key, System.Reflection.BindingFlags.IgnoreCase | System.Reflection.BindingFlags.Public | System.Reflection.BindingFlags.Instance);
if (propertyDef == null)
{
continue;
}
var value = propertyDef.GetValue(strucDef);
var valueString = value != null?value.ToString() : string.Empty;
if (valueString != queryParam.Value)
{
isMatch = false;
}
}
if (isMatch)
{
bundle.AddResourceEntry(strucDef, fullUrl);
}
}
return(Content <Bundle>(HttpStatusCode.OK, bundle));
}
public TemplateMetaDataModel GetMetaData(int templateId)
{
if (!CheckPoint.Instance.GrantEditTemplate(templateId))
{
throw new AuthorizationException("You do not have permission to edit this template");
}
DB.Template lTemplate = tdb.Templates.Single(t => t.Id == templateId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, lTemplate.ImplementationGuideType);
schema = schema.GetSchemaFromContext(lTemplate.PrimaryContextType);
var plugin = lTemplate.OwningImplementationGuide.ImplementationGuideType.GetPlugin();
var validator = plugin.GetValidator(this.tdb);
TemplateMetaDataModel lViewModel = new TemplateMetaDataModel()
{
Bookmark = lTemplate.Bookmark,
PrimaryContext = lTemplate.PrimaryContext,
PrimaryContextType = lTemplate.PrimaryContextType,
Description = lTemplate.Description,
Notes = lTemplate.Notes,
Id = lTemplate.Id,
OwningImplementationGuideId = lTemplate.OwningImplementationGuideId,
ImpliedTemplateId = lTemplate.ImpliedTemplateId,
IsOpen = lTemplate.IsOpen,
Name = lTemplate.Name,
Oid = lTemplate.Oid,
StatusId = lTemplate.StatusId,
TemplateTypeId = lTemplate.TemplateTypeId,
AuthorId = lTemplate.AuthorId,
Author = string.Format("{0} {1}", lTemplate.Author.FirstName, lTemplate.Author.LastName),
OrganizationName = lTemplate.OrganizationName,
MoveUrl = lTemplate.GetMoveUrl(),
TemplateTypeAbbreviation = lTemplate.TemplateType.GetAbbreviation(),
Locked = lTemplate.OwningImplementationGuide.IsPublished()
};
// Parse the validation results for the template
lViewModel.ValidationResults = (from vr in validator.ValidateTemplate(lTemplate, schema)
select new
{
ConstraintNumber = vr.ConstraintNumber,
Level = vr.Level.ToString(),
Message = vr.Message
});
lViewModel.Extensions = (from te in lTemplate.Extensions
select new TemplateMetaDataModel.TemplateExtension()
{
Identifier = te.Identifier,
Type = te.Type,
Value = te.Value
});
if (lTemplate.PreviousVersion != null)
{
lViewModel.PreviousVersionLink = "/TemplateManagement/View/" + lTemplate.PreviousVersion.Oid;
lViewModel.PreviousVersionName = lTemplate.PreviousVersion.Name;
lViewModel.PreviousVersionOid = lTemplate.PreviousVersion.Oid;
}
// Contained By Templates
List <TemplateMetaDataModel.TemplateReference> containedByTemplates = new List <TemplateMetaDataModel.TemplateReference>();
lViewModel.ContainedByTemplates = containedByTemplates;
var containingConstraints = (from tcr in this.tdb.TemplateConstraintReferences
join tc in this.tdb.TemplateConstraints on tcr.TemplateConstraintId equals tc.Id
where tcr.ReferenceIdentifier == lTemplate.Oid && tcr.ReferenceType == ConstraintReferenceTypes.Template
select tc);
foreach (var containingConstraint in containingConstraints)
{
TemplateMetaDataModel.TemplateReference newReference = new TemplateMetaDataModel.TemplateReference()
{
EditUrl = containingConstraint.Template.GetEditUrl(),
ViewUrl = containingConstraint.Template.GetViewUrl(),
Name = containingConstraint.Template.Name,
ImplementationGuide = containingConstraint.Template.OwningImplementationGuide.GetDisplayName()
};
containedByTemplates.Add(newReference);
}
// Implied By Templates
List <TemplateMetaDataModel.TemplateReference> impliedByTemplates = new List <TemplateMetaDataModel.TemplateReference>();
lViewModel.ImpliedByTemplates = impliedByTemplates;
foreach (Template implyingTemplate in this.tdb.Templates.Where(y => y.ImpliedTemplateId == templateId))
{
TemplateMetaDataModel.TemplateReference newReference = new TemplateMetaDataModel.TemplateReference()
{
EditUrl = implyingTemplate.GetEditUrl(),
ViewUrl = implyingTemplate.GetViewUrl(),
Name = implyingTemplate.Name,
ImplementationGuide = implyingTemplate.OwningImplementationGuide.GetDisplayName()
};
impliedByTemplates.Add(newReference);
}
return(lViewModel);
}
public SaveResponse Save(SaveModel model)
{
SaveResponse response = new SaveResponse();
using (IObjectRepository tdb = DBContext.Create())
{
if (!CheckPoint.Instance.GrantEditImplementationGuide(model.Template.OwningImplementationGuideId))
{
throw new AuthorizationException("You do not have authorization to edit templates associated with the selected implementation guide");
}
if (model.Template.Id != null && !CheckPoint.Instance.GrantEditTemplate(model.Template.Id.Value))
{
throw new AuthorizationException("You do not have permission to edit this template");
}
// Audit all changes to template and constraints
tdb.AuditChanges(CheckPoint.Instance.UserName, CheckPoint.Instance.OrganizationName, CheckPoint.Instance.HostAddress);
Template template = SaveTemplate(tdb, model.Template);
// Remove the specified constraints before creating/updating the other constraints
this.RemoveConstraints(tdb, model.RemovedConstraints);
// Create/update constraints
this.SaveConstraints(tdb, template, model.Constraints);
var duplicateNumbers = (from tcc in template.ChildConstraints
join tc in tdb.TemplateConstraints on tcc.Number equals tc.Number
join t in tdb.Templates on tc.TemplateId equals t.Id
where tcc.Id != tc.Id && t.OwningImplementationGuideId == template.OwningImplementationGuideId
select tcc.Number).ToList();
if (duplicateNumbers.Count > 0)
{
response.Error = string.Format("The following constraints have duplicate numbers: {0}", string.Join(", ", duplicateNumbers));
}
else
{
tdb.SaveChanges();
tdb.Refresh(System.Data.Entity.Core.Objects.RefreshMode.StoreWins, template);
foreach (var constraint in template.ChildConstraints)
{
tdb.Refresh(System.Data.Entity.Core.Objects.RefreshMode.StoreWins, constraint);
}
response.TemplateId = template.Id;
response.Constraints = GetConstraints(tdb, template);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
response.ValidationResults = (from vr in template.ValidateTemplate(schema)
select new
{
ConstraintNumber = vr.ConstraintNumber,
Level = vr.Level.ToString(),
Message = vr.Message
});
}
}
return(response);
}