public void should_be_able_to_read_all_files_and_run_the_most()
{
var directories = new DirectoryInfo(_directory).EnumerateDirectories();
var messages = new List <string>();
foreach (var directory in directories)
{
_sbmlTask = IoC.Resolve <ISbmlTask>().DowncastTo <SbmlTask>();
var caseName = directory.Name;
Debug.Print(caseName);
var fileName = Path.Combine(directory.FullName, $"{caseName}-sbml-l3v1.xml");
var context = IoC.Resolve <IMoBiContext>();
context.NewProject();
var project = context.CurrentProject;
IMoBiCommand command;
try
{
command = _sbmlTask.ImportModelFromSbml(fileName, project);
}
catch (Exception e)
{
messages.Add($"Import: {caseName} {e.Message}:");
continue;
}
if (command.IsEmpty())
{
messages.Add($"Import: {caseName}");
continue;
}
addjEmptyBBIfneeded(project);
addSettings(project, Path.Combine(directory.FullName, $"{caseName}-settings.txt"));
var buildConfigurtion = genreateBuildConfiguration(project);
var result = _modelConstructor.CreateModelFrom(buildConfigurtion, caseName);
if (result.IsInvalid)
{
messages.Add(caseName);
continue;
}
var simulation = new MoBiSimulation {
BuildConfiguration = buildConfigurtion, Model = result.Model
};
var simModelManager = new SimModelManager(_simModelExporter, new SimModelSimulationFactory(),
new DataFactory(IoC.Resolve <IMoBiDimensionFactory>(), new SBMLTestDataNamingService(), IoC.Resolve <IObjectPathFactory>(), IoC.Resolve <IDisplayUnitRetriever>(), IoC.Resolve <IDataRepositoryTask>()));
var runResults = simModelManager.RunSimulation(simulation);
if (!runResults.Success)
{
messages.Add(caseName);
continue;
}
var dt = _dateRepositoryTask.ToDataTable(runResults.Results);
dt.First().ExportToCSV(Path.Combine(directory.FullName, $"{caseName}-result_mobi.csv"));
_sbmlTask = null;
}
messages.Count.ShouldBeEqualTo(0, messages.ToString("\n"));
}
public override void GlobalContext()
{
base.GlobalContext();
_simModelExporter = IoC.Resolve <ISimModelExporter>();
_withIdRepository = IoC.Resolve <IWithIdRepository>();
_namingFactory = A.Fake <IDataNamingService>();
_dimensionFactory = IoC.Resolve <IDimensionFactory>();
_objectPathFactory = IoC.Resolve <IObjectPathFactory>();
_displayUnitRetriever = IoC.Resolve <IDisplayUnitRetriever>();
_simulation = IoC.Resolve <SimulationHelperForSpecs>().CreateSimulation();
new RegisterTaskForSpecs(_withIdRepository).RegisterAllIn(_simulation.Model.Root);
var schemaPath = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, "OSPSuite.SimModel.xsd");
XMLSchemaCache.InitializeFromFile(schemaPath);
sut = new SimModelManager(_simModelExporter, new SimModelSimulationFactory(), new DataFactory(_dimensionFactory, _namingFactory, _objectPathFactory, _displayUnitRetriever));
}
