private void AddTrainedModels()
{
// Load settings containing a trained model
var skylineSettings = TestFilesDir.GetTestPath("settings_test.skys");
RunUI(() => ShareListDlg <SrmSettingsList, SrmSettings> .ImportFile(SkylineWindow, Settings.Default.SrmSettingsList, skylineSettings));
// Add an untrained model
RunEditPeakScoringDlg(null, true, editPeakScoringModelDlg =>
{
editPeakScoringModelDlg.PeakScoringModelName = "untrained";
editPeakScoringModelDlg.OkDialog();
});
// Train a couple additional models
RunEditPeakScoringDlg(null, true, editPeakScoringModelDlg =>
{
editPeakScoringModelDlg.PeakScoringModelName = "skyline_default_plus";
editPeakScoringModelDlg.SelectedModelItem = LegacyScoringModel.DEFAULT_NAME;
editPeakScoringModelDlg.TrainModel();
editPeakScoringModelDlg.OkDialog();
});
RunEditPeakScoringDlg(null, true, editPeakScoringModelDlg =>
{
editPeakScoringModelDlg.PeakScoringModelName = "skyline_default";
editPeakScoringModelDlg.SelectedModelItem = LegacyScoringModel.DEFAULT_NAME;
editPeakScoringModelDlg.PeakCalculatorsGrid.Items[4].IsEnabled = false;
editPeakScoringModelDlg.PeakCalculatorsGrid.Items[5].IsEnabled = false;
editPeakScoringModelDlg.PeakCalculatorsGrid.Items[6].IsEnabled = false;
editPeakScoringModelDlg.TrainModel();
editPeakScoringModelDlg.OkDialog();
});
}
protected override void DoTest()
{
var doc = TestFilesDir.GetTestPath("ShareSettingsTest.sky");
RunUI(() => SkylineWindow.OpenFile(doc));
WaitForDocumentLoaded();
// Import bad settings leads to exception
string badSettings = TestFilesDir.GetTestPath("BadSettings.skys");
RunDlg <MessageDlg>(() => ShareListDlg <SrmSettingsList, SrmSettings> .ImportFile(SkylineWindow, Settings.Default.SrmSettingsList, badSettings),
messageDlg =>
{
Assert.AreEqual(TextUtil.LineSeparate(string.Format(Resources.ShareListDlg_ImportFile_Failure_loading__0__, badSettings),
string.Format(Resources.XmlUtil_GetInvalidDataMessage_The_file_contains_an_error_on_line__0__at_column__1__, 1, 1)),
messageDlg.Message);
messageDlg.OkDialog();
});
// Test round trip import-share
string originalExpected = TestFilesDir.GetTestPath("OriginalExpected.skys");
string originalActual = TestFilesDir.GetTestPath("OriginalActual.skys");
Assert.AreEqual(Settings.Default.SrmSettingsList.Count, 1);
RunUI(() => ShareListDlg <SrmSettingsList, SrmSettings> .ImportFile(SkylineWindow, Settings.Default.SrmSettingsList, originalExpected)); // Backward compatibility
Assert.AreEqual(Settings.Default.SrmSettingsList.Count, 3);
var settingsOld = SkylineWindow.Document.Settings;
RunDlg <ShareListDlg <SrmSettingsList, SrmSettings> >(SkylineWindow.ShareSettings,
shareSettingsDlg =>
{
Assert.AreEqual(shareSettingsDlg.List.Count, 3);
shareSettingsDlg.SelectAll(true);
shareSettingsDlg.OkDialog(originalActual);
});
RunDlg <MultiButtonMsgDlg>(() => ShareListDlg <SrmSettingsList, SrmSettings> .ImportFile(SkylineWindow, Settings.Default.SrmSettingsList, originalActual),
messageDlg => messageDlg.Btn0Click());
var settingsNew = SkylineWindow.Document.Settings;
Assert.AreSame(settingsOld, settingsNew);
// Change settings, save, share again, and import
IonType[] ionList =
{
IonType.b, IonType.y, IonType.precursor
};
RunUI(() => SkylineWindow.ModifyDocument("Change settings", d =>
d.ChangeSettings(d.Settings.ChangeTransitionLibraries(l => l.ChangeIonCount(l.IonCount / 2))
.ChangeTransitionFilter(f => f.ChangePeptideIonTypes(ionList))),
AuditLogEntry.SettingsLogFunction));
RunDlg <SaveSettingsDlg>(() => SkylineWindow.SaveSettings(),
saveSettingsDlg =>
{
saveSettingsDlg.SettingsName = ALTERED_SETTINGS_NAME;
saveSettingsDlg.OkDialog();
});
Assert.AreEqual(Settings.Default.SrmSettingsList.Count, 4);
var settingsChanged = SkylineWindow.Document.Settings;
string alteredExpected = TestFilesDir.GetTestPath("AlteredExpected.skys");
string alteredActual = TestFilesDir.GetTestPath("AlteredActual.skys");
// Test that sharing twice leads to same resutls
RunDlg <ShareListDlg <SrmSettingsList, SrmSettings> >(SkylineWindow.ShareSettings,
shareSettingsDlg =>
{
Assert.AreEqual(shareSettingsDlg.List.Count, 4);
shareSettingsDlg.SelectAll(true);
shareSettingsDlg.OkDialog(alteredActual);
});
RunDlg <ShareListDlg <SrmSettingsList, SrmSettings> >(SkylineWindow.ShareSettings,
shareSettingsDlg =>
{
Assert.AreEqual(shareSettingsDlg.List.Count, 4);
shareSettingsDlg.SelectAll(true);
shareSettingsDlg.OkDialog(alteredExpected);
});
AssertFileEquals(alteredActual, alteredExpected);
Settings.Default.SrmSettingsList.Clear();
Assert.AreEqual(Settings.Default.SrmSettingsList.Count, 0);
RunUI(() => ShareListDlg <SrmSettingsList, SrmSettings> .ImportFile(SkylineWindow, Settings.Default.SrmSettingsList, alteredActual));
var settingsChangedCopy = SkylineWindow.Document.Settings;
Assert.AreSame(settingsChanged, settingsChangedCopy);
}
public void ShowShare()
{
CheckDisposed();
using (var dlg = new ShareListDlg<ReportSpecList, ReportSpec>(Settings.Default.ReportSpecList)
{
Label = Resources.ExportReportDlg_ShowShare_Report_Definitions,
Filter = TextUtil.FileDialogFilterAll(Resources.ExportReportDlg_ShowShare_Skyline_Reports, ReportSpecList.EXT_REPORTS)
})
{
dlg.ShowDialog(this);
}
}
