public async Task <ActionResult <PaginatedResult <AccessionSection> > > GetRunsFromAccession(string genbank,
[FromQuery] int page,
[FromQuery] int itemsPerPage,
[FromQuery] string?pctId, // [int-int]
[FromQuery] string?cvgPct)
{
try
{
var items = _context.AccessionSections.Where(a => a.Acc == genbank);
if (pctId != null)
{
(int low, int high)pctIdLimits = Utilities.parseQueryParameterRange(pctId);
items = items.Where(a => a.PctId >= pctIdLimits.low && a.PctId <= pctIdLimits.high);
}
if (cvgPct != null)
{
(int low, int high)scoreLimits = Utilities.parseQueryParameterRange(cvgPct);
items = items.Where(a => a.CvgPct >= scoreLimits.low && a.CvgPct <= scoreLimits.high);
}
var accs = await items.OrderByDescending(a => a.CvgPct)
.Skip((page - 1) * itemsPerPage)
.Take(itemsPerPage).ToListAsync();
int numPages;
var totalResults = await items.CountAsync();
if (totalResults % itemsPerPage != 0)
{
numPages = (totalResults / itemsPerPage) + 1;
}
else
{
numPages = totalResults / itemsPerPage;
}
var paginatedResult = new PaginatedResult <AccessionSection>
{
Items = accs,
NumberOfPages = numPages
};
return(paginatedResult);
}
catch (ArgumentException)
{
return(BadRequest());
}
}
public async Task <ActionResult <PaginatedResult <FamilySection> > > GetRunsFromFamily(string family,
[FromQuery] int page,
[FromQuery] int itemsPerPage,
[FromQuery] string?pctId, // [int-int]
[FromQuery] string?score)
{
try
{
var items = _context.FamilySections.Where(f => f.Family == family);
if (pctId != null)
{
(int low, int high)pctIdLimits = Utilities.parseQueryParameterRange(pctId);
items = items.Where(f => f.PctId >= pctIdLimits.low && f.PctId <= pctIdLimits.high);
}
if (score != null)
{
(int low, int high)scoreLimits = Utilities.parseQueryParameterRange(score);
items = items.Where(f => f.Score >= scoreLimits.low && f.Score <= scoreLimits.high);
}
var families = await items.OrderByDescending(f => f.Score)
.Skip((page - 1) * itemsPerPage)
.Take(itemsPerPage).ToListAsync();
int numPages;
var totalResults = await items.CountAsync();
if (totalResults % itemsPerPage != 0)
{
numPages = (totalResults / itemsPerPage) + 1;
}
else
{
numPages = totalResults / itemsPerPage;
}
var paginatedResult = new PaginatedResult <FamilySection>
{
Items = families,
NumberOfPages = numPages
};
return(paginatedResult);
}
catch (ArgumentException)
{
return(BadRequest());
}
}
