/// <summary>
///
/// </summary>
/// <param name="path"></param>
/// <returns></returns>
public static IAnalysisReader CreateReader(SupportedTools tool)
{
IAnalysisReader reader = null;
switch (tool)
{
case SupportedTools.Sequest:
reader = new SequestAnalysisReader();
break;
case SupportedTools.XTandem:
reader = new XTandemAnalysisReader();
break;
case SupportedTools.MsgfPlus:
reader = new MsgfPlusAnalysisReader();
break;
case SupportedTools.NotSupported:
break;
default:
break;
}
return(reader);
}
public void FailedDataset03()
{
string aidPath = @"..\..\..\data\RegressionTests\AID_MPB_Hybrid_UnitTest003.txt";
if (!File.Exists(aidPath))
{
throw new FileNotFoundException("The unit test file " + aidPath + " was not found.");
}
// Make sure we have the full path so other referenced assemblies can find the test file.
aidPath = Path.GetFullPath(aidPath);
// Read the data file that holds all of the DMS related information.
clsAnalysisDescriptionReader reader = new clsAnalysisDescriptionReader(aidPath);
// We dont need to loop, since this test file should only have one analysis
// file in it, however, we'll do this for completeness. Find all the datasets
// that we are interested in processing.
foreach (clsAnalysisDescription description in reader.Analyses)
{
SequestAnalysisReader sequestData = new SequestAnalysisReader(description.mstrArchivePath, description.mstrDataset);
}
}
