public static void WriteSearchEngineParams(string msmName, SilacLabel[] labels, bool addLabels, bool variableMods, SearchEngineParams msh, string titleSuffix) { if (addLabels) { for (int i = 0; i < labels.Length; i++) { if (variableMods) { msh.AddVariabeModification(AminoAcid.GetMascotModificationStringForLabel(labels[i])); } else { msh.AddFixedModification(AminoAcid.GetMascotModificationStringForLabel(labels[i])); } } } msh.Title += titleSuffix; msh.Write(msmName.Substring(0, msmName.Length - 4) + ".par"); }