private static ISupplementaryAnnotationHeader GetHeader(string saPath)
{
ISupplementaryAnnotationHeader header;
using (var stream = FileUtilities.GetReadStream(saPath))
using (var reader = new ExtendedBinaryReader(stream))
{
header = SaReader.GetHeader(reader);
}
return(header);
}
private static string GetReferenceName(string saPath, IDictionary <string, IChromosome> refChromDict)
{
ISupplementaryAnnotationHeader header;
using (var stream = FileUtilities.GetReadStream(saPath))
using (var reader = new ExtendedBinaryReader(stream))
{
header = SaReader.GetHeader(reader);
}
return(refChromDict[header.ReferenceSequenceName].UcscName);
}