public O18QuantificationFileProcessorUI()
{
InitializeComponent();
base.SetFileArgument("MascotTextResult", new OpenFileArgument("Identified Result", new string[] { "txt", "noredundant" }));
this.Text = Constants.GetSQHTitle(title, version);
this.rawDir = new RcpaDirectoryField(btnRawDirectory, txtRawDirectory, "RawDir", "Raw File", false);
this.purityOfWater = new RcpaDoubleField(txtPurityOfO18Water, "PurityOfO18Water", "purity of O18 water", 0.95, true);
this.precursorPPMTolerance = new RcpaDoubleField(txtPrecursorTolerance, "PrecursorPPMTolerance", "precursor PPM tolerance", 50, true);
this.postDigestionLabelling = new RcpaCheckBox(cbPostDigestionLabelling, "PostDigestionLabelling", false);
this.limitScanRange = new RcpaCheckBox(cbScanRange, "LimitScanRange", false);
this.scanStart = new RcpaDoubleField(txtScanStart, "ScanStart", "Limit scan start percentage", 20, false);
this.scanEnd = new RcpaDoubleField(txtScanEnd, "ScanEnd", "Limit scan end percentage", 80, false);
this.rawExtensions = new RcpaComboBox<string>(cbRawFormat, "RawFormat", new string[] { ".raw", ".mzXML", ".mzData", ".mzData.xml" }, 0);
this.scanStart.MinValue = 0.0;
this.scanStart.MaxValue = 100.0;
this.scanEnd.MinValue = 0.0;
this.scanEnd.MaxValue = 100.0;
this.AddComponent(rawDir);
this.AddComponent(purityOfWater);
this.AddComponent(precursorPPMTolerance);
this.AddComponent(postDigestionLabelling);
this.AddComponent(limitScanRange);
this.AddComponent(scanStart);
this.AddComponent(scanEnd);
AddComponent(this.rawExtensions);
}
public ExtendSilacQuantificationProteinFileProcessorUI()
{
InitializeComponent();
base.SetFileArgument("IdentificationResult", new OpenFileArgument("Identification Result", new string[] { "txt", "noredundant" }));
this.Text = Constants.GetSQHTitle(title, version);
rawDir = new RcpaDirectoryField(btnRawDirectory, txtRawDirectory, "RawDir", "Raw File", false);
rawFormats = new RcpaComboBox <IRawFormat>(comboBox1, "RawFormat", new IRawFormat[] { new ThermoRawFormat() }, 0);
precursorPPMTolerance = new RcpaDoubleField(txtPrecursorTolerance, "PrecursorPPMTolerance", "precursor PPM tolerance", 50, true);
silacFile = new RcpaFileField(btnSilacFile, txtSilacFile, "SilacFile", new OpenFileArgument("SILAC Configuration", "ini"), true);
searchEngine = new RcpaComboBox <SearchEngineType>(cbSearchEngine, "SearchEngine", new SearchEngineType[] { SearchEngineType.MASCOT, SearchEngineType.SEQUEST }, 0);
ignoreModifications = new RcpaTextField(textBox1, "IgnoreModifications", "Ignore Modifications (such like @ for Heavy labelling of Leu)", "", false);
minCorrelation = new RcpaDoubleField(txtMinPepRegCorrelation, "MinCorrelation", "Minimum Peptide Regression Correlation", 0.8, true);
_profileLength = new RcpaIntegerField(txtProfileLength, "ProfileLength", "Profile length used in calculation", 3, true);
this.AddComponent(rawDir);
this.AddComponent(rawFormats);
this.AddComponent(precursorPPMTolerance);
this.AddComponent(silacFile);
this.AddComponent(searchEngine);
this.AddComponent(ignoreModifications);
this.AddComponent(minCorrelation);
this.AddComponent(_profileLength);
this.AddComponent(datasetClassification);
this.AddComponent(rawPairClassification);
this.InsertButton(2, btnLoadParam);
this.InsertButton(3, btnSaveParam);
}
public SpectrumSAPValidatorUI()
{
InitializeComponent();
peptideFile = new RcpaFileField(btnPeptideFile, txtPeptideFile, "PeptideFile", new OpenFileArgument("Peptides", "peptides"), true);
AddComponent(peptideFile);
imageDirectory = new RcpaDirectoryField(btnImageDirectory, txtImageDirectory, "ImageDirectory", "Images", true);
AddComponent(imageDirectory);
this.Text = Constants.GetSQHTitle(title, version);
}
public ValidatedPeptideDistillerUI()
{
InitializeComponent();
base.SetFileArgument("Peptides", new OpenFileArgument("Peptides", "peptides"));
imageDir = new RcpaDirectoryField(btnImage, txtImageDirectory, "ImageDir", "Spectrum Image", true);
AddComponent(imageDir);
this.Text = Constants.GetSQHTitle(title, version);
}
public TurboOuts2PepXmlConverterUI()
{
InitializeComponent();
this.Text = Constants.GetSQHTitle(title, version);
this.targetDir = new RcpaDirectoryField(btnOutsFile, txtOutsFile, "TargetDir", "Target PepXml", true);
this.AddComponent(targetDir);
base.SetFileArgument("OutsFile", new OpenFileArgument("Sequest Outs", "outs"));
base.SetDirectoryArgument("OutsDir", "Outs");
}
public ChromatographProfileBuilderUI()
{
InitializeComponent();
this.peptideFile = new RcpaFileField(btnPeptideFile, txtPeptideFile, "PeptideFile", new OpenFileArgument("peptides", "peptides"), true);
this.AddComponent(this.peptideFile);
this.rawDirectory = new RcpaDirectoryField(btnRawDirectory, txtRawDirectory, "RawDirectory", "Raw", true);
this.AddComponent(this.rawDirectory);
this.Text = Constants.GetSQHTitle(title, version);
}
public MultipleMgfPrecursorCorrectionProcessorUI()
{
InitializeComponent();
this.Text = Constants.GetSQHTitle(title, version);
this.SetFileArgument("PeptideFile", new OpenFileArgument("BuildSummary Peptides", "peptides"));
targetDir = new RcpaDirectoryField(btnTargetDir, txtTargetDir, "TargetDir", "Target MGF", true);
AddComponent(targetDir);
mgfFiles.FileArgument = new OpenFileArgument("Mascot Generic Format", "mgf");
}
public TurboCensusMs1BuilderUI()
{
InitializeComponent();
base.SetFileArgument("RawFile", new OpenFileArgument("Thermo Raw", "raw"));
base.SetDirectoryArgument("RawDir", "Raw");
this.targetDir = new RcpaDirectoryField(this.btnTargetDir, this.txtTargetDir, "TargetDir", "Target Directory", true);
AddComponent(this.targetDir);
this.Text = Constants.GetSQHTitle(title, version);
}
public TurboRaw2MzXmlProcessorUI()
{
InitializeComponent();
this.Text = Constants.GetSQHTitle(title, version);
this.targetDir = new RcpaDirectoryField(btnTarget, txtTarget, "TargetDir", "Target MzXml", true);
this.fullMsOnly = new RcpaCheckBox(cbFullMsOnly, "FullMsOnly", false);
this.centroid = new RcpaCheckBox(cbCentroid, "Centroid", true);
this.AddComponent(targetDir);
this.AddComponent(fullMsOnly);
this.AddComponent(centroid);
base.SetFileArgument("RawFile", new OpenFileArgument("Thermo Raw", "raw"));
base.SetDirectoryArgument("RawDir", "Raw");
}
public One2AllProcessorUI()
{
InitializeComponent();
this.SetFileArgument("Peptides", new OpenFileArgument("BuildSummary Peptides", "peptides"));
lbDtaFiles.FileArgument = new OpenFileArgument("Sequest Dtas", "dtas");
this.dtasFiles = new RcpaMultipleFileComponent(lbDtaFiles.GetItemInfos(), "DtasFiles", "Sequest Dtas File", false, true);
this.AddComponent(this.dtasFiles);
this.targetDir = new RcpaDirectoryField(btnTargetDirectory, txtTargetDirectory, "TargetDirectory", "Target Directory", true);
this.AddComponent(this.targetDir);
this.extractToSameDirectory = new RcpaCheckBox(cbExtractToSameDirectory, "ExtractToSameDirectory", false);
this.AddComponent(this.extractToSameDirectory);
this.Text = Constants.GetSQHTitle(title, version);
}
public SmallMoleculeDataImageBuilderUI()
{
InitializeComponent();
base.SetFileArgument("SigFile", new OpenFileArgument("Result", ".sig"));
sampleFile = new RcpaDirectoryField(button1, textBox1, "SampleDir", "Sample Data", true);
AddComponent(sampleFile);
refFile = new RcpaDirectoryField(button2, textBox2, "RefDir", "Reference Data", true);
AddComponent(refFile);
targetDir = new RcpaDirectoryField(button3, textBox3, "TargetDir", "Target Image", true);
AddComponent(targetDir);
peakPattern = new RcpaTextField(textBox4, "PeakPattern", "Peak Pattern (P for positive, N for negative)", "P", true);
AddComponent(peakPattern);
this.Text = Constants.GetSQHTitle(title, version);
}
