public static RatioPropertyDescriptor GetProperty(SrmDocument document, Type componentType, string propertyName)
{
string prefix;
IList <string> parts;
if (!TryParseProperty(propertyName, out prefix, out parts))
{
return(null);
}
var modifications = document.Settings.PeptideSettings.Modifications;
if (componentType == typeof(PeptideResult))
{
string displayName;
Func <PeptideResult, double?> getterFunc;
if (parts.Count == 0)
{
return(null);
}
string format;
string labelColumnPart = parts[0];
var labelType = FindLabel(modifications.GetModificationTypes(), labelColumnPart);
if (parts.Count == 1)
{
getterFunc = peptideResult =>
RatioValue.GetRatio(FindPeptideLabelRatio(peptideResult, labelType, null).Ratio);
displayName = string.Format("Ratio{0}ToGlobalStandards", labelColumnPart); // Not L10N
format = Formats.GLOBAL_STANDARD_RATIO;
}
else if (parts.Count != 2)
{
return(null);
}
else
{
string standardColumnPart = parts[1];
var standardType = FindLabel(modifications.RatioInternalStandardTypes, standardColumnPart);
if (prefix == RATIO_PREFIX)
{
getterFunc = peptideResult =>
RatioValue.GetRatio(FindPeptideLabelRatio(peptideResult, labelType, standardType).Ratio);
displayName = string.Format("Ratio{0}To{1}", labelColumnPart, standardColumnPart); // Not L10N
format = Formats.STANDARD_RATIO;
}
else if (prefix == RDOTP_PREFIX)
{
getterFunc = peptideResult =>
RatioValue.GetDotProduct(FindPeptideLabelRatio(peptideResult, labelType, standardType).Ratio);
displayName = string.Format("DotProduct{0}To{1}", labelColumnPart, standardColumnPart); // Not L10N
format = Formats.STANDARD_RATIO;
}
else
{
return(null);
}
}
return(MakeRatioProperty(propertyName, displayName, format, getterFunc));
}
if (componentType == typeof(PrecursorResult))
{
string format;
Func <PrecursorResult, double?> getterFunc;
string displayName;
if (parts.Count == 0)
{
if (prefix != RATIO_GS_PREFIX)
{
return(null);
}
getterFunc = precursorResult => RatioValue.GetRatio(precursorResult.ChromInfo.Ratios[precursorResult.ChromInfo.Ratios.Count - 1]);
displayName = "TotalAreaRatioToGlobalStandards"; // Not L10N
format = Formats.GLOBAL_STANDARD_RATIO;
}
else if (parts.Count != 1)
{
return(null);
}
else
{
format = Formats.STANDARD_RATIO;
string labelColumnPart = parts[0];
int ratioIndex = IndexOf(modifications.RatioInternalStandardTypes, labelColumnPart);
if (prefix == RATIO_PREFIX)
{
getterFunc = precursorResult =>
{
if (ratioIndex < 0 || ratioIndex >= precursorResult.ChromInfo.Ratios.Count)
{
return(null);
}
return(RatioValue.GetRatio(precursorResult.ChromInfo.Ratios[ratioIndex]));
};
displayName = string.Format("TotalAreaRatioTo{0}", labelColumnPart); // Not L10N
}
else if (prefix == RDOTP_PREFIX)
{
getterFunc = precursorResult =>
{
if (ratioIndex < 0 || ratioIndex >= precursorResult.ChromInfo.Ratios.Count)
{
return(null);
}
return(RatioValue.GetDotProduct(precursorResult.ChromInfo.Ratios[ratioIndex]));
};
displayName = string.Format("DotProductTo{0}", labelColumnPart); // Not L10N
}
else
{
return(null);
}
}
return(MakeRatioProperty(propertyName, displayName, format, getterFunc));
}
if (componentType == typeof(TransitionResult))
{
string format;
Func <TransitionResult, double?> getterFunc;
string displayName;
if (parts.Count == 0)
{
if (prefix != RATIO_GS_PREFIX)
{
return(null);
}
getterFunc = transitionResult => transitionResult.ChromInfo.Ratios[transitionResult.ChromInfo.Ratios.Count - 1];
displayName = "AreaRatioToGlobalStandards"; // Not L10N
format = Formats.GLOBAL_STANDARD_RATIO;
}
else if (prefix != RATIO_PREFIX || parts.Count != 1)
{
return(null);
}
else
{
format = Formats.STANDARD_RATIO;
string labelColumnPart = parts[0];
int ratioIndex = IndexOf(modifications.RatioInternalStandardTypes, labelColumnPart);
getterFunc = transitionResult =>
{
if (ratioIndex < 0 || ratioIndex >= transitionResult.ChromInfo.Ratios.Count)
{
return(null);
}
return(transitionResult.ChromInfo.Ratios[ratioIndex]);
};
displayName = string.Format("AreaRatioTo{0}", labelColumnPart); // Not L10N
}
return(MakeRatioProperty(propertyName, displayName, format, getterFunc));
}
return(null);
}
private void TestRatioFilter()
{
const double filterValue = 5.0;
RunUI(() =>
{
SkylineWindow.OpenFile(TestFilesDir.GetTestPath("MultiLabel.sky"));
SkylineWindow.ShowDocumentGrid(true);
});
DocumentGridForm documentGrid = FindOpenForm <DocumentGridForm>();
RunUI(() => documentGrid.ChooseView(Resources.SkylineViewContext_GetDocumentGridRowSources_Precursors));
var modifications = SkylineWindow.Document.Settings.PeptideSettings.Modifications;
var isotopeLabel = modifications.InternalStandardTypes.First(
label => label.Name == "heavy 15N");
AddFilter(documentGrid, PropertyPath.Parse("Proteins!*.Peptides!*.Precursors!*.Results!*.Value")
.Property(RatioPropertyDescriptor.MakePropertyName(RatioPropertyDescriptor.RATIO_PREFIX, isotopeLabel)),
FilterOperations.OP_IS_GREATER_THAN_OR_EQUAL,
filterValue.ToString(CultureInfo.CurrentCulture));
RunUI(() =>
{
var colPeptide = documentGrid.FindColumn(PropertyPath.Parse("Peptide"));
var filteredPeptides = Enumerable.Range(0, documentGrid.RowCount).Select(
rowIndex => (Peptide)documentGrid.DataGridView.Rows[rowIndex].Cells[colPeptide.Index].Value)
.ToArray();
CollectionAssert.AreEqual(new [] { "AEVAALAAENK", "AIDYVEATANSHSR" },
filteredPeptides.Select(peptide => peptide.ToString()).ToArray());
var allPeptides = new Peptides(new SkylineDataSchema(SkylineWindow, DataSchemaLocalizer.INVARIANT), new [] { IdentityPath.ROOT });
var ratioIndex = modifications.InternalStandardTypes.IndexOf(isotopeLabel);
Assert.IsTrue(ratioIndex >= 0);
foreach (var peptide in allPeptides.GetItems().OfType <Peptide>())
{
var peptidePath = peptide.IdentityPath;
bool hasMatchingPrecursorResult =
peptide.Precursors.Any(
precursor =>
precursor.Results.Values.Any(
precursorResult =>
RatioValue.GetRatio(precursorResult.ChromInfo.Ratios[ratioIndex]) >= filterValue));
Assert.AreEqual(hasMatchingPrecursorResult, filteredPeptides.Any(filteredPeptide => filteredPeptide.IdentityPath.Equals(peptidePath)));
}
}
);
RunUI(() => documentGrid.ChooseView(Resources.SkylineViewContext_GetDocumentGridRowSources_Precursors));
WaitForConditionUI(() => documentGrid.IsComplete);
Assert.AreEqual(12, documentGrid.RowCount);
{
var quickFilterForm = ShowDialog <QuickFilterForm>(() =>
{
var precursorMzColumn = documentGrid.FindColumn(PropertyPath.Root.Property("Mz"));
documentGrid.QuickFilter(precursorMzColumn);
});
RunUI(() =>
{
quickFilterForm.SetFilterOperation(0, FilterOperations.OP_IS_GREATER_THAN);
quickFilterForm.SetFilterOperand(0, 500.5.ToString(CultureInfo.CurrentCulture));
quickFilterForm.SetFilterOperation(1, FilterOperations.OP_IS_LESS_THAN);
quickFilterForm.SetFilterOperand(1, 600.5.ToString(CultureInfo.CurrentCulture));
});
OkDialog(quickFilterForm, quickFilterForm.OkDialog);
}
WaitForConditionUI(() => documentGrid.IsComplete);
Assert.AreEqual(8, documentGrid.RowCount);
{
var quickFilterForm = ShowDialog <QuickFilterForm>(() =>
{
var precursorMzColumn = documentGrid.FindColumn(PropertyPath.Root.Property("Mz"));
documentGrid.QuickFilter(precursorMzColumn);
});
RunUI(() =>
{
quickFilterForm.SetFilterOperand(0, "invalidnumber");
});
var messageDlg = ShowDialog <AlertDlg>(quickFilterForm.OkDialog);
OkDialog(messageDlg, messageDlg.OkDialog);
OkDialog(quickFilterForm, quickFilterForm.CancelButton.PerformClick);
}
}
