SpatialOperator CreateAdvectionSpatialOperator(IncompressibleBoundaryCondMap bcMap)
{
Func <int[], int[], int[], int> QuadOrderFunction = QuadOrderFunc.SumOfMaxDegrees();
string[] parameterList;
parameterList = ArrayTools.Cat(
VariableNames.Velocity0Vector(D),
VariableNames.Velocity0MeanVector(D),
"div(U)");
SpatialOperator SO = new SpatialOperator(new string[] { "LevelSet" },
parameterList,
new string[] { "Phi-Evo" },
QuadOrderFunc.NonLinear(2));
//div(u*phi)
SO.EquationComponents["Phi-Evo"].Add(new LevelSetLLFFlux(GridDat, bcMap));
//-phi*div(u)
SO.EquationComponents["Phi-Evo"].Add(new FextSource());
SO.Commit();
return(SO);
}
/// <summary>
/// Creating the time integrated DG-FEM discretization of the level set advection equation
/// </summary>
/// <param name="LevelSet"></param>
/// <param name="ExtensionVelocity"></param>
/// <param name="e"></param>
void CreateAdvectionSpatialOperator(SinglePhaseField LevelSet, SinglePhaseField ExtensionVelocity, ExplicitEuler.ChangeRateCallback e, SubGrid subGrid)
{
SpatialOperator SO;
Func <int[], int[], int[], int> QuadOrderFunction = QuadOrderFunc.Linear();
int D = LevelSet.GridDat.SpatialDimension;
//FieldFactory<SinglePhaseField> fac = new FieldFactory<SinglePhaseField>(SinglePhaseField.Factory);
//VectorField<SinglePhaseField> LevelSetGradient = new VectorField<SinglePhaseField>(D,
// LevelSet.Basis,fac);
SO = new SpatialOperator(1, 1, 1, QuadOrderFunction, new string[] { "LS", "S", "Result" });
double PenaltyBase = ((double)((LevelSet.Basis.Degree + 1) * (LevelSet.Basis.Degree + D))) / ((double)D);
SO.EquationComponents["Result"].Add(new ScalarVelocityAdvectionFlux(GridDat, PenaltyBase));
SO.Commit();
this.TimeIntegrator = new RungeKutta(RungeKuttaScheme.ExplicitEuler, SO, new CoordinateMapping(LevelSet), new CoordinateMapping(ExtensionVelocity), subGrid);
// Performing the task e
if (e != null)
{
this.TimeIntegrator.OnBeforeComputeChangeRate += e;
}
}
unsafe public static void Laplacian(ref int GridRef,
ref int DgDegree,
out int ierr)
{
try {
// grid, etc
// =========
GridData grd = null;// (GridData)(Infrastructure.GetObject(GridRef));
var b = new Basis(grd, DgDegree);
var map = new UnsetteledCoordinateMapping(b);
var L = new Laplace(1.3, grd.Cells.cj);
var op = new SpatialOperator(1, 0, 1, QuadOrderFunc.Linear(), "T", "c1");
op.EquationComponents["c1"].Add(L);
op.Commit();
// evaluate operator
// =================
var Mtx = new BlockMsrMatrix(map, map);
double[] B = new double[map.LocalLength];
var eval = op.GetMatrixBuilder(map, null, map);
eval.ComputeMatrix(Mtx, B);
// return data
// ===========
throw new NotImplementedException("todo");
} catch (Exception e) {
ierr = Infrastructure.ErrorHandler(e);
}
ierr = 0;
}
/// <summary>
/// Includes assembly of the matrix.
/// </summary>
/// <param name="L"></param>
protected override void CreateEquationsAndSolvers(GridUpdateDataVaultBase L)
{
using (FuncTrace tr = new FuncTrace()) {
// create operator
// ===============
{
double D = this.GridData.SpatialDimension;
double penalty_base = (T.Basis.Degree + 1) * (T.Basis.Degree + D) / D;
double penalty_factor = base.Control.penalty_poisson;
BoundaryCondMap <BoundaryType> PoissonBcMap = new BoundaryCondMap <BoundaryType>(this.GridData, this.Control.BoundaryValues, "T");
LapaceIp = new SpatialOperator(1, 1, QuadOrderFunc.SumOfMaxDegrees(), "T", "T");
MultidimensionalArray LengthScales;
if (this.GridData is GridData)
{
LengthScales = ((GridData)GridData).Cells.cj;
}
else if (this.GridData is AggregationGridData)
{
LengthScales = ((AggregationGridData)GridData).AncestorGrid.Cells.cj;
}
else
{
throw new NotImplementedException();
}
var flux = new ipFlux(penalty_base * base.Control.penalty_poisson, LengthScales, PoissonBcMap);
LapaceIp.EquationComponents["T"].Add(flux);
LapaceIp.Commit();
}
}
}
protected override void CreateEquationsAndSolvers(LoadbalData L)
{
Op = new XSpatialOperator(1, 0, 1, QuadOrderFunc.SumOfMaxDegrees(RoundUp: true), "u", "c1");
var blkFlux = new DxFlux(this.LsTrk, Control.alpha_A, Control.alpha_B);
Op.EquationComponents["c1"].Add(blkFlux); // Flux in Bulk Phase;
Op.EquationComponents["c1"].Add(new LevSetFlx(this.LsTrk, Control.alpha_A, Control.alpha_B)); // flux am lev-set 0
Op.OnIntegratingBulk += blkFlux.NowIntegratingBulk;
Op.Commit();
if (L == null)
{
TimeIntegration = new XdgBDFTimestepping(
new DGField[] { u }, new DGField[] { uResidual }, base.LsTrk,
true,
DelComputeOperatorMatrix, DelUpdateLevelset, DelUpdateCutCellMetrics,
3, // BDF3
//-1, // Crank-Nicolson
//0, // Explicit Euler
LevelSetHandling.LieSplitting,
MassMatrixShapeandDependence.IsTimeDependent,
SpatialOperatorType.LinearTimeDependent,
MassScale,
MultigridOperatorConfig,
this.MultigridSequence,
this.THRESHOLD,
true);
}
else
{
Debug.Assert(object.ReferenceEquals(this.MultigridSequence[0].ParentGrid, this.GridData));
TimeIntegration.DataRestoreAfterBalancing(L, new DGField[] { u }, new DGField[] { uResidual }, base.LsTrk, this.MultigridSequence);
}
}
public static SpatialOperator BuildEulerOperator(IGridData gridData, CompressibleControl control)
{
// Boundary condition map
Material material = control.GetMaterial();
IBoundaryConditionMap boundaryMap = new CompressibleBoundaryCondMap(gridData, control, material);
// Initialize operator
SpatialOperator EulerOperator = new SpatialOperator(
new string[] { CompressibleVariables.Density, CompressibleVariables.Momentum.xComponent, CompressibleVariables.Momentum.yComponent, CompressibleVariables.Energy },
new string[] { },
new string[] { CompressibleVariables.Density, CompressibleVariables.Momentum.xComponent, CompressibleVariables.Momentum.yComponent, CompressibleVariables.Energy },
QuadOrderFunc.NonLinearWithoutParameters(2)
);
// Map fluxes
EulerOperator.EquationComponents[CompressibleVariables.Density].Add(new OptimizedHLLCDensityFlux(boundaryMap, material));
EulerOperator.EquationComponents[CompressibleVariables.Momentum.xComponent].Add(new OptimizedHLLCMomentumFlux(boundaryMap, 0, material));
EulerOperator.EquationComponents[CompressibleVariables.Momentum.yComponent].Add(new OptimizedHLLCMomentumFlux(boundaryMap, 1, material));
EulerOperator.EquationComponents[CompressibleVariables.Energy].Add(new OptimizedHLLCEnergyFlux(boundaryMap, material));
EulerOperator.Commit();
return(EulerOperator);
}
/// <summary>
/// Based on the Ideas by
/// C. Basting and D. Kuzmin,
/// “A minimization-based finite element formulation for interface-preserving level set reinitialization”,
/// Computing, vol. 95, no. 1, pp. 13–25, Dec. 2012.
/// Create Spatial Operators and build the corresponding Matrices
/// For the Left-Hand Side of the ReInitProblem
/// RHS is computed on the fly in <see cref="ReInitSingleStep"/>
/// The Bulk component is constant unless the grid changes, thus it is computed in <see cref="BuildOperators(CellQuadratureScheme)"/>.
/// The Interface component changes with its motion.
/// This component is calculated in <see cref="UpdateOperators(CellQuadratureScheme)"/>.
/// </summary>
/// <param name="LSTrck"></param>
/// <param name="Control">various parameters <paramref name="EllipticReinitControl"/></param>
/// <param name="HMFOrder">order of tghe interface quadrature</param>
public EllipticReInit(LevelSetTracker LSTrck, EllipticReInitAlgoControl Control, SinglePhaseField LevelSetForReInit = null)
{
this.Control = Control;
this.LevelSetTracker = LSTrck;
if (LevelSetForReInit == null)
{
Phi = LevelSetTracker.LevelSets[0] as SinglePhaseField;
}
else
{
Phi = LevelSetForReInit;
}
this.underrelaxation = Control.underrelaxation;
Residual = new SinglePhaseField(Phi.Basis);
OldPhi = new SinglePhaseField(Phi.Basis);
NewPhi = new SinglePhaseField(Phi.Basis);
foreach (SinglePhaseField f in new List <SinglePhaseField> {
Residual, OldPhi, NewPhi
})
{
f.Clear();
f.Acc(1.0, Phi);
}
this.D = LevelSetTracker.GridDat.SpatialDimension;
this.ConvergenceCriterion = Control.ConvergenceCriterion;
this.MaxIteration = Control.MaxIt;
double PenaltyBase = ((double)((Phi.Basis.Degree + 1) * (Phi.Basis.Degree + D))) / ((double)D);
// Choose Forms according to Upwinding or Central Fluxes
string[] paramNames;
int noOfParamFields;
IEquationComponent BulkForm;
RHSForm myRHSForm;
LevelSetGradient = new VectorField <SinglePhaseField>(D, Phi.Basis, "LevelSetGradient", SinglePhaseField.Factory);
MeanLevelSetGradient = new VectorField <SinglePhaseField>(D, new Basis(Phi.GridDat, 0), "MeanLevelSetGradient", SinglePhaseField.Factory);
if (Control.Upwinding)
{
paramNames = new string[] { "OldLevelSet", "MeanLevelSetGradient[0]", "MeanLevelSetGradient[1]" };
noOfParamFields = D;
LevelSetGradient.Clear();
LevelSetGradient.Gradient(1.0, Phi);
//LevelSetGradient.GradientByFlux(1.0, Phi);
MeanLevelSetGradient.Clear();
MeanLevelSetGradient.AccLaidBack(1.0, LevelSetGradient);
parameterFields = ArrayTools.Cat(new SinglePhaseField[] { OldPhi }, MeanLevelSetGradient.ToArray());
//throw new NotImplementedException("ToDO");
BulkForm = new EllipticReInitUpwindForm_Laplace(Control.PenaltyMultiplierFlux * PenaltyBase, LSTrck);
myRHSForm = new EllipticReInitUpwindForm_RHS(Control.PenaltyMultiplierFlux * PenaltyBase, LSTrck);
OldDirection = new double[MeanLevelSetGradient.CoordinateVector.ToArray().Length];
for (int i = 0; i < MeanLevelSetGradient.CoordinateVector.Length; i++)
{
OldDirection[i] = Math.Sign(MeanLevelSetGradient.CoordinateVector[i]);
}
NewDirection = OldDirection.CloneAs();
}
else
{
paramNames = new string[] { };
noOfParamFields = 0;
parameterFields = new SinglePhaseField[] { };
BulkForm = new CentralDifferencesLHSForm(Control.PenaltyMultiplierFlux * PenaltyBase, LSTrck.GridDat.Cells.cj);
myRHSForm = new CentralDifferencesRHSForm(Control.PenaltyMultiplierFlux * PenaltyBase, LSTrck);
}
// SIP for the bulk Phase
//this.Operator_bulk = new SpatialOperator(1, noOfParamFields, 1, QuadOrderFunc.SumOfMaxDegrees(1, RoundUp: false), variableNames);
this.Operator_bulk = BulkForm.Operator();
// Zero at the Interface
// Calculate Quadrature Order
Func <int[], int[], int[], int> InterfaceQuadOrder;
InterfaceQuadOrder = QuadOrderFunc.FixedOrder(Phi.Basis.Degree * 2 + 2);
// Generate Interface Operator
this.Operator_interface = (new EllipticReInitInterfaceForm(Control.PenaltyMultiplierInterface * PenaltyBase, LSTrck)).XOperator(new[] { "A" }, InterfaceQuadOrder);
// Nonlinear Part on the RHS
// switch for the potential functions
switch (Control.Potential)
{
case ReInitPotential.BastingDoubleWell: {
myRHSForm.DiffusionRate = ((d, b) => DiffusionRates.DoubleWell(d, b));
break;
};
case ReInitPotential.BastingSingleWell: {
myRHSForm.DiffusionRate = ((d, b) => DiffusionRates.SingleWell(d, b));
break;
};
case ReInitPotential.SingleWellNear: {
myRHSForm.DiffusionRate = ((d, b) => DiffusionRates.SingleWellNear(d, b));
break;
};
case ReInitPotential.P4DoubleWell: {
Console.WriteLine("Warning - This Option for Elliptic ReInit does not work well");
myRHSForm.DiffusionRate = ((d, b) => DiffusionRates.DoubleWellAlternative(d, b));
break;
};
case ReInitPotential.SingleWellOnCutDoubleWellElse: {
myRHSForm.DiffusionRate = ((d, b) => DiffusionRates.SingleWellOnCutDoubleWellElse(d, b));
break;
}
}
Operator_RHS = myRHSForm.Operator(QuadOrderFunc.SumOfMaxDegrees(2, RoundUp: true));
// The result of the nonlinear part on the rhs is projected on a single-phase field
RHSField = new SinglePhaseField(Phi.Basis, "RHS");
OpMatrix = new MsrMatrix(this.Phi.Mapping, this.Phi.Mapping);
OpAffine = new double[OpMatrix.RowPartitioning.LocalLength];
// Matrix and RHS for the Bulk component
OpMatrix_bulk = new MsrMatrix(this.Phi.Mapping, this.Phi.Mapping);
OpAffine_bulk = new double[OpMatrix.RowPartitioning.LocalLength];
// Matrix and RHS for the Interface Penalty
OpMatrix_interface = new MsrMatrix(this.Phi.Mapping, this.Phi.Mapping);
OpAffine_interface = new double[OpMatrix.RowPartitioning.LocalLength];
// Init Parameter Fields
OldPhi.Clear();
OldPhi.Acc(1.0, Phi);
// Compute Matrices
UpdateBulkMatrix();
}
/// <summary>
/// Obtaining the time integrated spatial discretization of the reinitialization equation in a narrow band around the zero level set, based on a Godunov's numerical Hamiltonian calculation
/// </summary>
/// <param name="LS"> The level set function </param>
/// <param name="Restriction"> The narrow band around the zero level set </param>
/// <param name="NumberOfTimesteps">
/// maximum number of pseudo-timesteps
/// </param>
/// <param name="thickness">
/// The smoothing width of the signum function.
/// This is the main stabilization parameter for re-initialization.
/// It should be set to approximately 3 cells.
/// </param>
/// <param name="TimestepSize">
/// size of the pseudo-timestep
/// </param>
public void ReInitialize(LevelSet LS, SubGrid Restriction, double thickness, double TimestepSize, int NumberOfTimesteps)
{
using (var tr = new FuncTrace()) {
// log parameters:
tr.Info("thickness: " + thickness.ToString(NumberFormatInfo.InvariantInfo));
tr.Info("TimestepSize: " + TimestepSize.ToString(NumberFormatInfo.InvariantInfo));
tr.Info("NumberOfTimesteps: " + NumberOfTimesteps);
ExplicitEuler TimeIntegrator;
SpatialOperator SO;
Func <int[], int[], int[], int> QuadratureOrder = QuadOrderFunc.NonLinear(3);
if (m_ctx.SpatialDimension == 2)
{
SO = new SpatialOperator(1, 5, 1, QuadratureOrder, new string[] { "LS", "LSCGV", "LSDG[0]", "LSUG[0]", "LSDG[1]", "LSUG[1]", "Result" });
SO.EquationComponents["Result"].Add(new GodunovHamiltonian(m_ctx, thickness));
SO.Commit();
TimeIntegrator = new RungeKutta(m_Scheme, SO, new CoordinateMapping(LS), new CoordinateMapping(LSCGV, LSDG[0], LSUG[0], LSDG[1], LSUG[1]), sgrd: Restriction);
}
else
{
SO = new SpatialOperator(1, 7, 1, QuadratureOrder, new string[] { "LS", "LSCGV", "LSDG[0]", "LSUG[0]", "LSDG[1]", "LSUG[1]", "LSDG[2]", "LSUG[2]", "Result" });
SO.EquationComponents["Result"].Add(new GodunovHamiltonian(m_ctx, thickness));
SO.Commit();
TimeIntegrator = new RungeKutta(m_Scheme, SO, new CoordinateMapping(LS), new CoordinateMapping(LSCGV, LSDG[0], LSUG[0], LSDG[1], LSUG[1], LSDG[2], LSUG[2]), sgrd: Restriction);
}
// Calculating the gradients in each sub-stage of a Runge-Kutta integration procedure
ExplicitEuler.ChangeRateCallback EvalGradients = delegate(double t1, double t2) {
LSUG.Clear();
CalculateLevelSetGradient(LS, LSUG, "Upwind", Restriction);
LSDG.Clear();
CalculateLevelSetGradient(LS, LSDG, "Downwind", Restriction);
LSCG.Clear();
CalculateLevelSetGradient(LS, LSCG, "Central", Restriction);
LSCGV.Clear();
var VolMask = (Restriction != null) ? Restriction.VolumeMask : null;
LSCGV.ProjectAbs(1.0, VolMask, LSCG.ToArray());
};
TimeIntegrator.OnBeforeComputeChangeRate += EvalGradients;
{
EvalGradients(0, 0);
var GodunovResi = new SinglePhaseField(LS.Basis, "Residual");
SO.Evaluate(1.0, 0.0, LS.Mapping, TimeIntegrator.ParameterMapping.Fields, GodunovResi.Mapping, Restriction);
//Tecplot.Tecplot.PlotFields(ArrayTools.Cat<DGField>( LSUG, LSDG, LS, GodunovResi), "Residual", 0, 3);
}
// pseudo-timestepping
// ===================
double factor = 1.0;
double time = 0;
LevelSet prevLevSet = new LevelSet(LS.Basis, "prevLevSet");
CellMask RestrictionMask = (Restriction == null) ? null : Restriction.VolumeMask;
for (int i = 0; (i < NumberOfTimesteps); i++)
{
tr.Info("Level set reinitialization pseudo-timestepping, timestep " + i);
// backup old Levelset
// -------------------
prevLevSet.Clear();
prevLevSet.Acc(1.0, LS, RestrictionMask);
// time integration
// ----------------
double dt = TimestepSize * factor;
tr.Info("dt = " + dt.ToString(NumberFormatInfo.InvariantInfo) + " (factor = " + factor.ToString(NumberFormatInfo.InvariantInfo) + ")");
TimeIntegrator.Perform(dt);
time += dt;
// change norm
// ------
prevLevSet.Acc(-1.0, LS, RestrictionMask);
double ChangeNorm = prevLevSet.L2Norm(RestrictionMask);
Console.WriteLine("Reinit: PseudoTime: {0} - Changenorm: {1}", i, ChangeNorm);
//Tecplot.Tecplot.PlotFields(new SinglePhaseField[] { LS }, m_ctx, "Reinit-" + i, "Reinit-" + i, i, 3);
}
//*/
}
}
/// <summary>
///
/// </summary>
/// <param name="jCell"></param>
/// <param name="AcceptedMask"></param>
/// <param name="Phi"></param>
/// <param name="gradPhi"></param>
/// <param name="__DiffusionCoeff">Output: if artificial diffusion is turned</param>
/// <param name="MaxAllowedPhi">Input: upper threshold for the values of <paramref name="Phi"/> in cell <see cref="jCell"/>.</param>
/// <param name="MinAllowedPhi">Input: lower threshold for the values of <paramref name="Phi"/> in cell <see cref="jCell"/>.</param>
/// <returns></returns>
public bool LocalSolve_Iterative(int jCell, BitArray AcceptedMask, SinglePhaseField Phi, VectorField <SinglePhaseField> gradPhi, SinglePhaseField __DiffusionCoeff, double MaxAllowedPhi, double MinAllowedPhi)
{
//this.LocalSolve_Geometric(jCell, AcceptedMask, Phi, +1, out MinAllowedPhi, out MaxAllowedPhi);) {
int N = this.LevelSetBasis.GetLength(jCell);
int i0G = this.LevelSetMapping.GlobalUniqueCoordinateIndex(0, jCell, 0);
int i0L = this.LevelSetMapping.LocalUniqueCoordinateIndex(0, jCell, 0);
SinglePhaseField __AcceptedMask = new SinglePhaseField(new Basis(this.GridDat, 0), "accepted");
for (int j = 0; j < AcceptedMask.Length; j++)
{
__AcceptedMask.SetMeanValue(j, AcceptedMask[j] ? 1.0 : 0.0);
}
// subgrid on which we are working, consisting only of one cell
SubGrid jCellGrid = new SubGrid(new CellMask(this.GridDat, Chunk.GetSingleElementChunk(jCell)));
// create spatial operator
IEvaluatorNonLin evo;
{
SpatialOperator op = new SpatialOperator(1, 2, 1, QuadOrderFunc.NonLinear(2), "Phi", "dPhi_dx0", "dPhi_dx1", "cod1");
op.EquationComponents["cod1"].Add(new ReinitOperator());
op.EdgeQuadraturSchemeProvider = g => (new EdgeQuadratureScheme(domain: EdgeMask.GetEmptyMask(g)));
op.VolumeQuadraturSchemeProvider = g => (new CellQuadratureScheme(domain: jCellGrid.VolumeMask));
op.Commit();
evo = op.GetEvaluatorEx(Phi.Mapping.Fields, gradPhi.Mapping.Fields, Phi.Mapping);
evo.ActivateSubgridBoundary(jCellGrid.VolumeMask, subGridBoundaryTreatment: SubGridBoundaryModes.InnerEdge);
}
// create artificial diffusion operator
MultidimensionalArray DiffMtx;
double[] DiffRhs;
SpatialOperator dop;
{
double penaltyBase = this.LevelSetBasis.Degree + 2;
penaltyBase = penaltyBase.Pow2();
dop = (new ArtificialViscosity(AcceptedMask, penaltyBase, GridDat.Cells.h_min, jCell, -1.0)).Operator(1);
MsrMatrix _DiffMtx = new MsrMatrix(this.LevelSetMapping, this.LevelSetMapping);
double[] _DiffRhs = new double[this.LevelSetMapping.LocalLength];
dop.ComputeMatrixEx(this.LevelSetMapping, new DGField[] { Phi, null, null }, this.LevelSetMapping,
_DiffMtx, _DiffRhs, OnlyAffine: false,
edgeQuadScheme: (new EdgeQuadratureScheme(domain: jCellGrid.AllEdgesMask)),
volQuadScheme: (new CellQuadratureScheme(domain: jCellGrid.VolumeMask)));
// extract matrix for 'jCell'
DiffMtx = MultidimensionalArray.Create(N, N);
DiffRhs = new double[N];
for (int n = 0; n < N; n++)
{
#if DEBUG
int Lr;
int[] row_cols = null;
double[] row_vals = null;
Lr = _DiffMtx.GetRow(i0G + n, ref row_cols, ref row_vals);
for (int lr = 0; lr < Lr; lr++)
{
int ColIndex = row_cols[lr];
double Value = row_vals[lr];
Debug.Assert((ColIndex >= i0G && ColIndex < i0G + N) || (Value == 0.0), "Matrix is expected to be block-diagonal.");
}
#endif
for (int m = 0; m < N; m++)
{
DiffMtx[n, m] = _DiffMtx[i0G + n, i0G + m];
}
DiffRhs[n] = _DiffRhs[i0L + n];
}
#if DEBUG
var Test = DiffMtx.Transpose();
Test.Acc(-1.0, DiffMtx);
Debug.Assert(Test.InfNorm() <= 1.0e-8);
#endif
}
// find 'good' initial value by geometric solve AND
// thresholds for the maximum an minimal value of Phi
double Range = MaxAllowedPhi - MinAllowedPhi;
MinAllowedPhi -= 0.1 * Range;
MaxAllowedPhi += 0.1 * Range;
// timestep for pseudo-timestepping
double dt = 0.5 * this.GridDat.Cells.h_min[jCell] / (((double)(this.LevelSetBasis.Degree)).Pow2());
DGField[] PlotFields = new DGField[] { Phi, gradPhi[0], gradPhi[1], __DiffusionCoeff, __AcceptedMask };
//Tecplot.Tecplot.PlotFields(Params, "itt_0", "EllipicReinit", 0, 3);
double[] PrevVal = new double[N];
double[] NextVal = new double[N];
Phi.Coordinates.GetRow(jCell, PrevVal);
// pseudo-timestepping
//if(jCell == 80)
// Tecplot.Tecplot.PlotFields(PlotFields, "itt_0", "EllipicReinit", 0, 3);
//Console.Write(" Local solve cell " + jCell + " ... ");
bool converged = false;
double DiffusionCoeff = 0;
int IterGrowCount = 0; // number of iterations in which the residual grew
double LastResi = double.NaN;
for (int iIter = 0; iIter < 1000; iIter++)
{
//Console.Write(" Local solve iteration " + iIter + " ... ");
PerformRKstep(dt, jCell, AcceptedMask, Phi, gradPhi, evo);
__DiffusionCoeff.SetMeanValue(jCell, DiffusionCoeff);
if (jCell == 80)
{
DiffusionCoeff = 0.1;
}
if (DiffusionCoeff > 0)
{
//Console.WriteLine(" Diffusion on.");
double[] _DiffRhs = new double[this.LevelSetMapping.LocalLength];
dop.ComputeMatrixEx(this.LevelSetMapping, new DGField[] { Phi, gradPhi[0], gradPhi[1] }, this.LevelSetMapping,
default(MsrMatrix), _DiffRhs, OnlyAffine: true,
edgeQuadScheme: (new EdgeQuadratureScheme(domain: jCellGrid.AllEdgesMask)),
volQuadScheme: (new CellQuadratureScheme(domain: CellMask.GetEmptyMask(this.GridDat))));
// extract matrix for 'jCell'
for (int n = 0; n < N; n++)
{
DiffRhs[n] = _DiffRhs[i0L + n];
}
PerformArtificialDiffusion(dt * DiffusionCoeff, jCell, Phi, DiffMtx, DiffRhs);
}
Phi.Coordinates.GetRow(jCell, NextVal);
double resi = Math.Sqrt(GenericBlas.L2DistPow2(NextVal, PrevVal) / GenericBlas.L2NormPow2(PrevVal));
double[] A = NextVal;
NextVal = PrevVal;
PrevVal = A;
if (iIter > 0 && resi > LastResi)
{
IterGrowCount++;
}
else
{
IterGrowCount = 0;
}
LastResi = resi;
if (resi < 1.0e-10)
{
converged = true;
break;
}
double maxPhi, minPhi;
Phi.GetExtremalValuesInCell(out minPhi, out maxPhi, jCell);
bool MinAlarm = minPhi < MinAllowedPhi;
bool Maxalarm = maxPhi > MaxAllowedPhi;
bool GrowAlarm = IterGrowCount > 4;
bool IterAlarm = iIter >= 50;
if (MinAlarm || Maxalarm || GrowAlarm)
{
// Diffusion coefficient should be increased
if (DiffusionCoeff == 0)
{
DiffusionCoeff = 1.0e-2;
}
else
{
if (DiffusionCoeff < 1.0e3)
{
DiffusionCoeff *= 2;
}
}
//Console.WriteLine(" increasing Diffusion: {0}, Alarms : {1}{2}{3}{4}", DiffusionCoeff, MinAlarm ? 1 : 0, Maxalarm ? 1 : 0, GrowAlarm ? 1 : 0, IterAlarm ? 1 : 0);
}
//if(jCell == 80 && iIter < 100)
// Tecplot.Tecplot.PlotFields(PlotFields, "itt_" + (iIter + 1), "EllipicReinit", iIter + 1, 3);
}
return(converged);
}
/// <summary>
/// Declaration of the spatial operator
/// </summary>
protected override SpatialOperator GetOperatorInstance(int D)
{
// instantiate boundary condition mapping
// ======================================
boundaryCondMap = new IncompressibleBoundaryCondMap(this.GridData, this.Control.BoundaryValues, PhysicsMode.Incompressible);
// instantiate operator
// ====================
string[] CodName = (new[] { "ResidualMomentumX", "ResidualMomentumY", "ResidualMomentumZ" }).GetSubVector(0, D).Cat("ResidualConti");
var op = new SpatialOperator(
__DomainVar: VariableNames.VelocityVector(D).Cat(VariableNames.Pressure),
__ParameterVar: VariableNames.GravityVector(D),
__CoDomainVar: CodName,
QuadOrderFunc: QuadOrderFunc.NonLinear(2));
op.LinearizationHint = LinearizationHint.GetJacobiOperator;
// Temporal Operator
// =================
var TempOp = new ConstantTemporalOperator(op, 0.0); // init with entire diagonal set to 0.0
op.TemporalOperator = TempOp;
for (int d = 0; d < D; d++)
{
TempOp.SetDiagonal(CodName[d], Control.Density); // set momentum equation entries to density
}
// Pressure Reference
// ==================
// if there is no Dirichlet boundary condition,
// the mean value of the pressure is free:
op.FreeMeanValue[VariableNames.Pressure] = !boundaryCondMap.DirichletPressureBoundary;
// Momentum Equation
// =================
// convective part:
{
for (int d = 0; d < D; d++)
{
var comps = op.EquationComponents[CodName[d]];
var ConvBulk = new LocalLaxFriedrichsConvection(D, boundaryCondMap, d, Control.Density);
comps.Add(ConvBulk); // bulk component
}
}
// pressure part:
{
for (int d = 0; d < D; d++)
{
var comps = op.EquationComponents[CodName[d]];
var pres = new PressureGradientLin_d(d, boundaryCondMap);
comps.Add(pres); // bulk component
}
}
// viscous part:
{
for (int d = 0; d < D; d++)
{
var comps = op.EquationComponents[CodName[d]];
double penalty_bulk = this.Control.PenaltySafety;
var Visc = new swipViscosity_Term1(penalty_bulk, d, D, boundaryCondMap,
ViscosityOption.ConstantViscosity,
constantViscosityValue: Control.Viscosity);
comps.Add(Visc); // bulk component GradUTerm
}
}
// Continuity equation
// ===================
{
for (int d = 0; d < D; d++)
{
var src = new Divergence_DerivativeSource(d, D);
var flx = new Divergence_DerivativeSource_Flux(d, boundaryCondMap);
op.EquationComponents[CodName[D]].Add(src);
op.EquationComponents[CodName[D]].Add(flx);
}
//IBM_Op.EquationComponents["div"].Add(new PressureStabilization(1, 1.0 / this.Control.PhysicalParameters.mu_A));
}
// Gravity parameter
// =================
op.ParameterFactories.Add(delegate(IReadOnlyDictionary <string, DGField> DomainVarFields) {
return(D.ForLoop(d => (VariableNames.Gravity_d(d), this.Gravity[d] as DGField)));
});
// commit & return
// ===============
op.Commit();
return(op);
}
protected override SpatialOperator GetSpatialOperator(SolverConfiguration SolverConf, int SpatialComponent, int SpatialDirection)
{
SpatialOperator DivergenceOp = new SpatialOperator(new string[] { VariableNames.Velocity_d(SpatialComponent) }, new string[] { "div_d" }, QuadOrderFunc.Linear());
DivergenceOp.EquationComponents["div_d"].Add(new Divergence_DerivativeSource(SpatialComponent, SolverConf.SpatialDimension));
DivergenceOp.EquationComponents["div_d"].Add(new Divergence_DerivativeSource_Flux(SpatialComponent, SolverConf.BcMap));
DivergenceOp.Commit();
return(DivergenceOp);
}
protected override SpatialOperator GetSpatialOperator(SolverConfiguration SolverConf, int SpatialComponent, int SpatialDirection)
{
SpatialOperator PressureOp = new SpatialOperator(new string[] { VariableNames.Pressure }, new string[] { "p1" }, QuadOrderFunc.Linear());
PressureOp.EquationComponents["p1"].Add(new PressureGradientLin_d(SpatialDirection, SolverConf.BcMap));
if (SolverConf.Control.PressureGradientSource != null)
{
PressureOp.EquationComponents["p1"].Add(
new SrcPressureGradientLin_d(SolverConf.Control.PressureGradientSource[SpatialDirection]));
}
PressureOp.Commit();
return(PressureOp);
}
/// <summary>
/// creates the spatial operator that consists only of component <paramref name="c"/>
/// </summary>
public static XSpatialOperatorMk2 XOperator(this IEquationComponent c, int DegreeOfNonlinearity = 1)
{
return(XOperator(c, QuadOrderFunc.NonLinear(DegreeOfNonlinearity)));
}
/// <summary>
/// creates the spatial operator that consists only of component <paramref name="c"/>
/// </summary>
public static XSpatialOperatorMk2 XOperator(this IEquationComponent c, IEnumerable <string> species, int DegreeOfNonlinearity = 1)
{
return(XOperator(c, species, QuadOrderFunc.NonLinear(DegreeOfNonlinearity)));
}
protected override void CreateEquationsAndSolvers(GridUpdateDataVaultBase L)
{
using (FuncTrace tr = new FuncTrace()) {
this.BcMap = new IncompressibleBoundaryCondMap(this.GridData, grid.GetBoundaryConfig(), PhysicsMode.Incompressible);
// assemble system, create matrix
// ------------------------------
int D = GridData.SpatialDimension;
//double penalty_base = ((double)((U[0].Basis.Degree + 1) * (U[0].Basis.Degree + D))) / ((double)D);
double penalty_base = 1.0;
double penalty_factor = 1.2;
// equation assembly
// -----------------
string[] CodNames = D.ForLoop(i => "C" + i);
Operator = new SpatialOperator(VariableNames.VelocityVector(D), new string[] { VariableNames.ViscosityMolecular }, CodNames, QuadOrderFunc.Linear());
for (int d = 0; d < D; d++)
{
if ((this.whichTerms & Terms.T1) != 0)
{
var flx1 = new swipViscosity_Term1(penalty_base * penalty_factor, d, D, BcMap, ViscosityOption.VariableViscosity);
flx1.g_Diri_Override = this.solution.U;
flx1.g_Neu_Override = this.solution.dU;
Operator.EquationComponents[CodNames[d]].Add(flx1);
}
if ((this.whichTerms & Terms.T2) != 0)
{
var flx2 = new swipViscosity_Term2(penalty_base * penalty_factor, d, D, BcMap, ViscosityOption.VariableViscosity);
flx2.g_Diri_Override = this.solution.U;
flx2.g_Neu_Override = this.solution.dU;
Operator.EquationComponents[CodNames[d]].Add(flx2);
}
if ((this.whichTerms & Terms.T3) != 0)
{
var flx3 = new swipViscosity_Term3(penalty_base * penalty_factor, d, D, BcMap, ViscosityOption.VariableViscosity);
flx3.g_Diri_Override = this.solution.U;
flx3.g_Neu_Override = this.solution.dU;
Operator.EquationComponents[CodNames[d]].Add(flx3);
}
} // */
Operator.Commit();
var map = this.U.Mapping;
OperatorMtx = new MsrMatrix(map, map);
Operator.ComputeMatrixEx(map, new DGField[] { this.mu }, map,
OperatorMtx, this.bnd.CoordinateVector,
volQuadScheme: null, edgeQuadScheme: null);
// test for matrix symmetry
// ========================
if (base.MPISize == 1)
{
double MatrixAssymmetry = OperatorMtx.SymmetryDeviation();
Console.WriteLine("Matrix asymmetry: " + MatrixAssymmetry);
Assert.LessOrEqual(Math.Abs(MatrixAssymmetry), 1.0e-10);
}
}
}
public XDGTestSetup(
int p,
double AggregationThreshold,
int TrackerWidth,
MultigridOperator.Mode mumo,
XQuadFactoryHelper.MomentFittingVariants momentFittingVariant,
ScalarFunction LevSetFunc = null)
{
// Level set, tracker and XDG basis
// ================================
if (LevSetFunc == null)
{
LevSetFunc = ((_2D)((x, y) => 0.8 * 0.8 - x * x - y * y)).Vectorize();
}
LevSet = new LevelSet(new Basis(grid, 2), "LevelSet");
LevSet.Clear();
LevSet.ProjectField(LevSetFunc);
LsTrk = new LevelSetTracker(grid, XQuadFactoryHelper.MomentFittingVariants.Classic, TrackerWidth, new string[] { "A", "B" }, LevSet);
LsTrk.UpdateTracker();
XB = new XDGBasis(LsTrk, p);
XSpatialOperator Dummy = new XSpatialOperator(1, 0, 1, QuadOrderFunc.SumOfMaxDegrees(RoundUp: true), "C1", "u");
//Dummy.EquationComponents["c1"].Add(new
Dummy.Commit();
//Tecplot.PlotFields(new DGField[] { LevSet }, "agglo", 0.0, 3);
// operator
// ========
Debug.Assert(p <= 4);
XDGBasis opXB = new XDGBasis(LsTrk, 4); // we want to have a very precise quad rule
var map = new UnsetteledCoordinateMapping(opXB);
int quadOrder = Dummy.QuadOrderFunction(map.BasisS.Select(bs => bs.Degree).ToArray(), new int[0], map.BasisS.Select(bs => bs.Degree).ToArray());
//agg = new MultiphaseCellAgglomerator(new CutCellMetrics(momentFittingVariant, quadOrder, LsTrk, LsTrk.SpeciesIdS.ToArray()), AggregationThreshold, false);
agg = LsTrk.GetAgglomerator(LsTrk.SpeciesIdS.ToArray(), quadOrder, __AgglomerationTreshold: AggregationThreshold);
foreach (var S in LsTrk.SpeciesIdS)
{
Console.WriteLine("Species {0}, no. of agglomerated cells {1} ",
LsTrk.GetSpeciesName(S),
agg.GetAgglomerator(S).AggInfo.SourceCells.Count());
}
// mass matrix factory
// ===================
// Basis maxB = map.BasisS.ElementAtMax(b => b.Degree);
//MassFact = new MassMatrixFactory(maxB, agg);
MassFact = LsTrk.GetXDGSpaceMetrics(LsTrk.SpeciesIdS.ToArray(), quadOrder, 1).MassMatrixFactory;
// Test field
// ==========
// set the test field: this is a polynomial function,
// but different for each species; On this field, restriction followed by prolongation should be the identity
this.Xdg_uTest = new XDGField(this.XB, "uTest");
Dictionary <SpeciesId, double> dumia = new Dictionary <SpeciesId, double>();
int i = 2;
foreach (var Spc in LsTrk.SpeciesIdS)
{
dumia.Add(Spc, i);
i -= 1;
}
SetTestValue(Xdg_uTest, dumia);
// dummy operator matrix which fits polynomial degree p
// ====================================================
Xdg_opMtx = new BlockMsrMatrix(Xdg_uTest.Mapping, Xdg_uTest.Mapping);
Xdg_opMtx.AccEyeSp(120.0);
// XDG Aggregation BasiseS
// =======================
//XAggB = MgSeq.Select(agGrd => new XdgAggregationBasis[] { new XdgAggregationBasis(uTest.Basis, agGrd) }).ToArray();
XAggB = new XdgAggregationBasis[MgSeq.Length][];
var _XAggB = AggregationGridBasis.CreateSequence(MgSeq, Xdg_uTest.Mapping.BasisS);
for (int iLevel = 0; iLevel < XAggB.Length; iLevel++)
{
XAggB[iLevel] = new[] { (XdgAggregationBasis)(_XAggB[iLevel][0]) };
XAggB[iLevel][0].Update(agg);
}
// Multigrid Operator
// ==================
Xdg_opMtx = new BlockMsrMatrix(Xdg_uTest.Mapping, Xdg_uTest.Mapping);
Xdg_opMtx.AccEyeSp(120.0);
XdgMultigridOp = new MultigridOperator(XAggB, Xdg_uTest.Mapping,
Xdg_opMtx,
MassFact.GetMassMatrix(Xdg_uTest.Mapping, false),
new MultigridOperator.ChangeOfBasisConfig[][] {
new MultigridOperator.ChangeOfBasisConfig[] {
new MultigridOperator.ChangeOfBasisConfig()
{
VarIndex = new int[] { 0 }, mode = mumo, Degree = p
}
}
});
}
/// <summary>
/// Includes assembly of the matrix.
/// </summary>
/// <param name="L"></param>
protected override void CreateEquationsAndSolvers(GridUpdateDataVaultBase L)
{
using (FuncTrace tr = new FuncTrace()) {
// create operator
// ===============
SpatialOperator LapaceIp;
{
double D = this.GridData.SpatialDimension;
double penalty_base = (T.Basis.Degree + 1) * (T.Basis.Degree + D) / D;
double penalty_factor = base.Control.penalty_poisson;
BoundaryCondMap <BoundaryType> PoissonBcMap = new BoundaryCondMap <BoundaryType>(this.GridData, this.Control.BoundaryValues, "T");
LapaceIp = new SpatialOperator(1, 1, QuadOrderFunc.SumOfMaxDegrees(), "T", "T");
var flux = new ipFlux(penalty_base * base.Control.penalty_poisson, this.GridData.Cells.cj, PoissonBcMap);
LapaceIp.EquationComponents["T"].Add(flux);
LapaceIp.Commit();
}
// Create Matrices
// ===============
{
// time measurement for matrix assembly
Stopwatch stw = new Stopwatch();
stw.Start();
// console
Console.WriteLine("creating sparse system for {0} DOF's ...", T.Mapping.Ntotal);
// quadrature domain
var volQrSch = new CellQuadratureScheme(true, CellMask.GetFullMask(this.GridData));
var edgQrSch = new EdgeQuadratureScheme(true, EdgeMask.GetFullMask(this.GridData));
#if DEBUG
// in DEBUG mode, we compare 'MsrMatrix' (old, reference implementation) and 'BlockMsrMatrix' (new standard)
var RefLaplaceMtx = new MsrMatrix(T.Mapping);
#endif
using (new BlockTrace("SipMatrixAssembly", tr)) {
LaplaceMtx = new BlockMsrMatrix(T.Mapping);
LaplaceAffine = new double[T.Mapping.LocalLength];
LapaceIp.ComputeMatrixEx(T.Mapping, null, T.Mapping,
LaplaceMtx, LaplaceAffine,
volQuadScheme: volQrSch, edgeQuadScheme: edgQrSch);
}
#if DEBUG
LaplaceAffine.ClearEntries();
LapaceIp.ComputeMatrixEx(T.Mapping, null, T.Mapping,
RefLaplaceMtx, LaplaceAffine,
volQuadScheme: volQrSch, edgeQuadScheme: edgQrSch);
MsrMatrix ErrMtx = RefLaplaceMtx.CloneAs();
ErrMtx.Acc(-1.0, LaplaceMtx);
double err = ErrMtx.InfNorm();
double infNrm = LaplaceMtx.InfNorm();
Console.WriteLine("Matrix comparison error: " + err + ", matrix norm is: " + infNrm);
Assert.Less(err, infNrm * 1e-10, "MsrMatrix2 comparison failed.");
#endif
stw.Stop();
Console.WriteLine("done {0} sec.", stw.Elapsed.TotalSeconds);
}
//double condNo = LaplaceMtx.condest(BatchmodeConnector.Flavor.Octave);
//Console.WriteLine("condition number: {0:0.####E-00} ",condNo);
}
}
