public void TestMarginalDistributionX()
{
p_xy = new [, ] {
{ 1 / 8f, 1 / 16f, 1 / 32f, 1 / 32f },
{ 1 / 16f, 1 / 8f, 1 / 32f, 1 / 32f },
{ 1 / 16f, 1 / 16f, 1 / 16f, 1 / 16f },
{ 1 / 4f, 0f, 0f, 0f }
};
p_x = ProbabilityDistribution.MarginalX(p_xy);
p_y = ProbabilityDistribution.MarginalY(p_xy);
Assert.True(ProbabilityDistribution.IsValid(p_x));
Assert.True(ProbabilityDistribution.IsValid(p_y));
Assert.True(ProbabilityDistribution.IsValid(p_xy));
Assert.Equal(1 / 8f, p_xy[0, 0]);
Assert.Equal(1 / 16f, p_xy[1, 0]);
Assert.Equal(1 / 16f, p_xy[2, 0]);
// Assert.Equal(1/8f, p_xy[0]);
// Assert.Equal(1/16f, p_xy[1]);
// Assert.Equal(1/32f, p_xy[2]);
Assert.Equal(new [] { 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f }, p_x);
Assert.Equal(new [] { 1 / 2f, 1 / 4f, 1 / 8f, 1 / 8f }, p_y);
Assert.Equal(2f, ProbabilityDistribution.Entropy(p_x, 2));
Assert.Equal(7 / 4f, ProbabilityDistribution.Entropy(p_y, 2));
Assert.Equal(27 / 8f, ProbabilityDistribution.JointEntropy(p_xy, 2));
Assert.Equal(11 / 8f, ProbabilityDistribution.ConditionalEntropyYX(p_xy, p_x, 2));
Assert.Equal(3 / 8f, ProbabilityDistribution.MutualInformation(p_x, p_y, p_xy, 2));
}
public void TestReadmeExample0()
{
int binCount = 3;
Tally <float> tally = new Tally <float>(binCount, x => (int)(x * binCount));
// Some where, this is called repeatedly.
// tally.Add(neuron.value);
// But let's supply some fake values for demonstration purposes.
tally.Add(0.2f);
tally.Add(0.1f);
tally.Add(0.4f);
tally.Add(0.5f);
// Finally we analyze it.
float[] p = tally.probability;
Assert.Equal(new [] { 2 / 4f, 2 / 4f, 0f }, p);
float H = ProbabilityDistribution.Entropy(p);
// Here's the entropy without any normalization.
Assert.Equal(0.7f, H, 1);
// Let's use a base of 2 so the entropy is in the units of bits.
float Hbits = ProbabilityDistribution.Entropy(p, 2);
Assert.Equal(1f, Hbits, 1);
// So this neuron's value carries one bit of information. It's either going
// into the first bin or the second bin at an equal probability and never
// going into the third bin.
}
public void TestThreeIndependentCoinFlips()
{
p_xy = new [, ] {
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f }
};
p_x = ProbabilityDistribution.MarginalX(p_xy);
p_y = ProbabilityDistribution.MarginalY(p_xy);
Assert.True(ProbabilityDistribution.IsValid(p_x));
Assert.True(ProbabilityDistribution.IsValid(p_y));
Assert.True(ProbabilityDistribution.IsValid(p_xy));
Assert.Equal(1.58f, ProbabilityDistribution.Entropy(p_x, 2), 2);
Assert.Equal(1.58f, ProbabilityDistribution.Entropy(p_y, 2), 2);
Assert.Equal(1f, ProbabilityDistribution.Entropy(p_x, p_x.Length), 2);
Assert.Equal(1f, ProbabilityDistribution.Entropy(p_y, p_y.Length), 2);
Assert.Equal(1.1f, ProbabilityDistribution.Entropy(p_x), 2);
Assert.Equal(1.1f, ProbabilityDistribution.Entropy(p_y), 2);
Assert.Equal(3.17f, ProbabilityDistribution.JointEntropy(p_xy, 2), 2);
Assert.Equal(1f, ProbabilityDistribution.JointEntropy(p_xy, p_xy.Length), 2);
Assert.Equal(2.2f, ProbabilityDistribution.JointEntropy(p_xy), 2);
Assert.Equal(1.58f, ProbabilityDistribution.ConditionalEntropyYX(p_xy, p_x, 2), 2);
Assert.Equal(0.5f, ProbabilityDistribution.ConditionalEntropyYX(p_xy, p_x, p_xy.Length), 2);
Assert.Equal(1f, ProbabilityDistribution.ConditionalEntropyYX(p_xy, p_x, p_x.Length), 2);
Assert.Equal(1.1f, ProbabilityDistribution.ConditionalEntropyYX(p_xy, p_x), 2);
Assert.Equal(1.58f, ProbabilityDistribution.ConditionalEntropyXY(p_xy, p_y, 2), 2);
Assert.Equal(1.1f, ProbabilityDistribution.ConditionalEntropyXY(p_xy, p_y), 2);
Assert.Equal(0f, ProbabilityDistribution.MutualInformation(p_x, p_y, p_xy, 2), 2);
Assert.Equal(0f, ProbabilityDistribution.MutualInformation(p_x, p_y, p_xy), 2);
Assert.Equal(0f, ProbabilityDistribution.MutualInformation(p_x, p_y, p_xy, p_xy.Length), 2);
Assert.Equal(0f, ProbabilityDistribution.MutualInformation(p_x, p_y, p_xy, p_x.Length), 2);
}
public void TestCompareWithProbability()
{
var fc = new TallyAlphabet <int>(new[] { "a", "b", "c" }, 3, y => y);
fc.Add("a", 2);
fc.Add("a", 1);
fc.Add("a", 0);
fc.Add("b", 2);
fc.Add("b", 1);
fc.Add("b", 0);
fc.Add("c", 2);
fc.Add("c", 1);
fc.Add("c", 0);
Assert.Equal(1 / 3f, fc.ProbabilityX("a"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityX("b"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityX("c"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityY(0));
Assert.Equal(1 / 3f, fc.ProbabilityY(1));
Assert.Equal(1 / 9f, fc.ProbabilityXY("a", 0));
Assert.Equal(1 / 3f, fc.ProbabilityYGivenX(0, "a"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityYGivenX(1, "a"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityYGivenX(0, "b"), 2);
Assert.Equal(1 / 3f, fc.ProbabilityYGivenX(1, "b"), 2);
Assert.Equal(1f, fc.EntropyYGivenX(3), 1);
Assert.Equal(9, fc.probabilityXY.Length);
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, fc.probabilityX);
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, fc.probabilityY);
Assert.Equal(new [, ] {
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f },
}, fc.probabilityXY);
Assert.Equal(1 / 2f, ProbabilityDistribution.ConditionalEntropyYX(fc.probabilityXY, fc.probabilityX, fc.probabilityXY.Length));
Assert.Equal(1f, ProbabilityDistribution.ConditionalEntropyYX(fc.probabilityXY, fc.probabilityX, fc.probabilityX.Length));
Assert.Equal(1f, fc.EntropyXGivenY(3), 1);
Assert.Equal(1 / 2f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY, fc.probabilityY, fc.probabilityXY.Length));
Assert.Equal(1f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY, fc.probabilityY, fc.probabilityY.Length));
Assert.Equal(2f, fc.EntropyXY(3), 1);
Assert.Equal(2f, ProbabilityDistribution.JointEntropy(fc.probabilityXY, fc.probabilityX.Length), 1);
Assert.Equal(1f, ProbabilityDistribution.JointEntropy(fc.probabilityXY, fc.probabilityXY.Length), 1);
Assert.Equal(3.2f, ProbabilityDistribution.JointEntropy(fc.probabilityXY, 2), 1);
Assert.Equal(1f, fc.EntropyX(3), 2);
Assert.Equal(1f, ProbabilityDistribution.Entropy(fc.probabilityX, fc.probabilityX.Length), 2);
Assert.Equal(0.5f, ProbabilityDistribution.Entropy(fc.probabilityX, fc.probabilityXY.Length), 2);
Assert.Equal(1f, fc.EntropyY(3), 1);
Assert.Equal(1f, ProbabilityDistribution.Entropy(fc.probabilityY, fc.probabilityY.Length), 2);
Assert.Equal(0.5f, ProbabilityDistribution.Entropy(fc.probabilityY, fc.probabilityXY.Length), 2);
// H(X|Y) = H(X,Y) - H(Y)
// This should always be true.
Assert.Equal(0f, fc.EntropyXGivenY() - fc.EntropyXY() + fc.EntropyY(), 1);
Assert.Equal(0f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY, fc.probabilityY)
- ProbabilityDistribution.JointEntropy(fc.probabilityXY)
+ ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY, fc.probabilityY), 1);
Assert.Equal(0f, fc.MutualInformationXY(3), 2);
}
public void TestOneSample()
{
var fc = new TallySingle(10, -1f, 1f);
fc.Add(0f);
Assert.Equal(1f, fc.Probability(0f));
Assert.Equal(0f, fc.Probability(1f));
Assert.Equal(0f, ProbabilityDistribution.Entropy(fc.probability));
}
public void TestAlphabet()
{
var fc = new TallyAlphabet(new[] { "a", "b" });
fc.Add("a");
fc.Add("b");
Assert.Equal(0.5f, fc.Probability("a"));
Assert.Equal(0.5f, fc.Probability("b"));
Assert.Equal(1f, ProbabilityDistribution.Entropy(fc.probability, fc.binCount), 2);
}
public void TestArrayTallyAlphabet2()
{
var fc = new ArrayTallyAlphabet <int>(new[] { "a", "b", "c" }, 3, y => y);
fc.Add(new [] { "a", "b" }, new [] { 2, 1 });
fc.Add(new [] { "a", "b" }, new [] { 1, 1 });
fc.Add(new [] { "a", "b" }, new [] { 0, 1 });
fc.Add(new [] { "b", "b" }, new [] { 2, 1 });
fc.Add(new [] { "b", "b" }, new [] { 1, 1 });
fc.Add(new [] { "b", "b" }, new [] { 0, 1 });
fc.Add(new [] { "c", "b" }, new [] { 2, 1 });
fc.Add(new [] { "c", "b" }, new [] { 1, 1 });
fc.Add(new [] { "c", "b" }, new [] { 0, 1 });
Assert.Equal(9, fc.probabilityXY[0, 0].Length);
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, fc.probabilityX[0]);
Assert.Equal(new [, ] {
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f },
{ 1 / 9f, 1 / 9f, 1 / 9f },
}, fc.probabilityXY[0, 0]);
Assert.Equal(new [, ] {
{ 0f, 0f, 0f },
{ 1 / 3f, 1 / 3f, 1 / 3f },
{ 0f, 0f, 0f },
}, fc.probabilityXY[1, 0]);
Assert.Equal(new [, ] {
{ 0f, 0f, 0f },
{ 0f, 1f, 0f },
{ 0f, 0f, 0f },
}, fc.probabilityXY[1, 1]);
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, ProbabilityDistribution.MarginalY(fc.probabilityXY[0, 0]));
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, ProbabilityDistribution.MarginalY(fc.probabilityXY[1, 0]));
Assert.Equal(new [] { 0f, 1f, 0f }, ProbabilityDistribution.MarginalX(fc.probabilityXY[1, 0]));
Assert.Equal(new [] { 0f, 1f, 0f }, fc.probabilityX[1]);
Assert.Equal(new [] { 1 / 3f, 1 / 3f, 1 / 3f }, fc.probabilityY[0]);
Assert.Equal(new [] { 0f, 1f, 0f }, fc.probabilityY[1]);
Assert.Equal(1 / 2f, ProbabilityDistribution.ConditionalEntropyYX(fc.probabilityXY[0, 0], fc.probabilityX[0], fc.probabilityXY[0, 0].Length));
Assert.Equal(1f, ProbabilityDistribution.ConditionalEntropyYX(fc.probabilityXY[0, 0], fc.probabilityX[0], fc.probabilityX[0].Length));
Assert.Equal(1 / 2f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY[0, 0], fc.probabilityY[0], fc.probabilityXY[0, 0].Length));
Assert.Equal(1f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY[0, 0], fc.probabilityY[0], fc.probabilityY[0].Length));
Assert.Equal(2f, ProbabilityDistribution.JointEntropy(fc.probabilityXY[0, 0], fc.probabilityX[0].Length), 1);
Assert.Equal(1f, ProbabilityDistribution.JointEntropy(fc.probabilityXY[0, 0], fc.probabilityXY[0, 0].Length), 1);
Assert.Equal(3.2f, ProbabilityDistribution.JointEntropy(fc.probabilityXY[0, 0], 2), 1);
Assert.Equal(1f, ProbabilityDistribution.Entropy(fc.probabilityX[0], fc.probabilityX[0].Length), 2);
Assert.Equal(0.5f, ProbabilityDistribution.Entropy(fc.probabilityX[0], fc.probabilityXY[0, 0].Length), 2);
Assert.Equal(1f, ProbabilityDistribution.Entropy(fc.probabilityY[0], fc.probabilityY[0].Length), 2);
Assert.Equal(0.5f, ProbabilityDistribution.Entropy(fc.probabilityY[0], fc.probabilityXY[0, 0].Length), 2);
// H(X|Y) = H(X,Y) - H(Y)
// This should always be true.
Assert.Equal(0f, ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY[0, 0], fc.probabilityY[0])
- ProbabilityDistribution.JointEntropy(fc.probabilityXY[0, 0])
+ ProbabilityDistribution.ConditionalEntropyXY(fc.probabilityXY[0, 0], fc.probabilityY[0]), 1);
}
public void TestTwoSamples()
{
var fc = new TallySingle(10, -1f, 1f);
fc.Add(0f);
fc.Add(0.5f);
Assert.Equal(0.5f, fc.Probability(0f));
Assert.Equal(0f, fc.Probability(1f));
Assert.Equal(0.5f, fc.Probability(0.5f));
Assert.Equal(0.301f, ProbabilityDistribution.Entropy(fc.probability, fc.binCount), 3);
}
public void TestReadmeExample1()
{
int binCount = 4;
Tally <float, float> tally
= new Tally <float, float>(binCount, x => (int)(x * binCount),
binCount, y => (int)(y * binCount));
// Some where, this is called repeatedly.
// tally.Add(sensor.value, effector.value);
// But let's supply some fake values for demonstration purposes.
tally.Add(0.6f, 0.1f);
tally.Add(0.5f, 0.5f);
tally.Add(0.7f, 0.9f);
tally.Add(0.7f, 0.3f);
// Finally we analyze it.
float[] px = tally.probabilityX;
Assert.Equal(new [] { 0f, 0f, 1f, 0f }, px);
float[] py = tally.probabilityY;
Assert.Equal(new [] { 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f }, py);
float[,] pxy = tally.probabilityXY;
Assert.Equal(new [, ] {
{ 0f, 0f, 0f, 0f },
{ 0f, 0f, 0f, 0f },
{ 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f },
{ 0f, 0f, 0f, 0f },
}, pxy);
float Hsensor = ProbabilityDistribution.Entropy(px, 2);
float Heffector = ProbabilityDistribution.Entropy(py, 2);
// H(effector | sensor)
float Heffector_sensor = ProbabilityDistribution.ConditionalEntropyYX(pxy, px, 2);
Assert.Equal(0f, Hsensor, 1);
// So the sensor carries no information. It's going to the second bin always
// based on what's been seen.
Assert.Equal(2f, Heffector, 1);
// The effector carries 2 bits of information. It could show up in any of
// the bins with equal probability. It would take two bits to describe which bin.
Assert.Equal(2f, Heffector_sensor, 1);
// Given that we know the sensor, there's no reduction in randomness for the
// effector. In fact since H(effector) = H(effector|sensor) we now know that
// the sensor and effector are entirely independent of one another.
}
public void TestReadmeExample2()
{
int binCount = 4;
ArrayTally <float, float> tally
= new ArrayTally <float, float>(binCount, x => (int)(x * binCount),
binCount, y => (int)(y * binCount));
// Some where, this is called repeatedly.
// tally.Add(sensor.value, effector.value);
// But let's supply some fake values for demonstration purposes.
tally.Add(new [] { 0.6f, 0.1f }, new [] { 0.1f, 0f });
tally.Add(new [] { 0.5f, 0.5f }, new [] { 0.5f, 0f });
tally.Add(new [] { 0.7f, 0.9f }, new [] { 0.9f, 0f });
tally.Add(new [] { 0.7f, 0.3f }, new [] { 0.3f, 0f });
// float[] px = tally.probabilityX[0];
// float[] py = tally.probabilityY[0];
// float[,] pxy = tally.probabilityXY[0, 0];
// If we analyze the first element of X and Y, we'll get the same results
// from example 2. However, if we look at the second element of X, which
// is the same as the first element of Y, we'll get something different.
// Finally we analyze it.
float[] px = tally.probabilityX[1];
Assert.Equal(new [] { 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f }, px);
float[] py = tally.probabilityY[0];
Assert.Equal(new [] { 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f }, py);
float[,] pxy = tally.probabilityXY[1, 0];
Assert.Equal(new [, ] {
{ 1 / 4f, 0f, 0f, 0f },
{ 0f, 1 / 4f, 0f, 0f },
{ 0f, 0f, 1 / 4f, 0f },
{ 0f, 0f, 0f, 1 / 4f },
}, pxy);
float Hsensor = ProbabilityDistribution.Entropy(px, 2);
float Heffector = ProbabilityDistribution.Entropy(py, 2);
// H(effector | sensor)
float Heffector_sensor = ProbabilityDistribution.ConditionalEntropyYX(pxy, px, 2);
Assert.Equal(2f, Hsensor, 1);
// So the sensor carries 2 bits of information. It's a copy of what the
// first effector's producing.
Assert.Equal(2f, Heffector, 1);
// The effector carries 2 bits of information. It could show up in any of
// the bins with equal probability. It would take two bits to describe which bin.
Assert.Equal(0f, Heffector_sensor, 1);
// Given that we know the sensor, there's zero information required to know
// how the effector will behave. H(effector|sensor) = 0 means the effector
// is completely determined by the sensor, which makes sense since they're
// the same values.
// Footnote: I had a typo where I ran the computation against [0, 0] instead
// of [1, 0], but I got the right result which surprised me. Why the same
// result? Because the above and below matrix when you sum up the elements
// with px you get the same thing.
Assert.Equal(new [, ] {
{ 0f, 0f, 0f, 0f },
{ 0f, 0f, 0f, 0f },
{ 1 / 4f, 1 / 4f, 1 / 4f, 1 / 4f },
{ 0f, 0f, 0f, 0f },
}, tally.probabilityXY[0, 0]);
}