public float GetScore(Nucleotide[] nucs)
{
if (nucs.Length != Length)
throw new ArgumentException("nucs.Len != " + Length);
if (_cache == null)
_cache = new ProbMotifCache(_data);
var norm = _cache.NormFactor;
var max = 0.0;
foreach (var ds in _cache.DataInversions)
{
var cur = 1.0;
for (int i = 0; i < Length; i++)
{
var nicId = (int)nucs[i];
var d = ds[i];
if (nicId < 4)
cur *= d[nicId];
else
if (nicId == (int) Nucleotide.Any)
cur *= 0.1;
else
throw new NotSupportedException();
}
if (cur > max)
max = cur;
}
return (float)(max*norm);
}
/// <summary>
/// Добавление прецедента в мотив.
/// </summary>
public void AddItem(Nucleotide[] nucs, int factor = 1)
{
if(nucs == null || nucs.Length != Length)
throw new ArgumentException("nucs");
for (int i = 0; i < nucs.Length; i++)
{
var nucId = (int) nucs[i];
if (nucId < 4)
{
var d = _data[i];
d[nucId] += factor;
d[4] += factor;
}
else
if (nucId == (int) Nucleotide.Any)
_data[i][4] += factor;
else
throw new NotSupportedException();
}
_cache = null;
}
