public void Load(ushort refIndex)
{
if (refIndex == CurrentRefIndex)
{
return;
}
SequenceReader.GetCompressedSequence(Sequence.Renamer.EnsemblReferenceNames[refIndex]);
SiftCache = SiftReader.Read(refIndex);
PolyPhenCache = PolyPhenReader.Read(refIndex);
CurrentRefIndex = refIndex;
}
private static PredictionCacheStaging GetStagingWithPredictionIndices(PredictionCache cache, bool useSift,
List <TranscriptPacket> packets, int numRefSeqs)
{
var predictionsPerRef = new Prediction[numRefSeqs][];
for (ushort refIndex = 0; refIndex < numRefSeqs; refIndex++)
{
predictionsPerRef[refIndex] = GetPredictions(packets, useSift, refIndex);
}
var header = PredictionCacheHeader.GetHeader(cache.Header.CreationTimeTicks, cache.Header.GenomeAssembly,
numRefSeqs);
return(new PredictionCacheStaging(header, cache.LookupTable, predictionsPerRef));
}