private static List <string> ProcessLine(ShowBy showBy, PredictorCollection predictorCollection, string line,
MerLength merLength, int?dOfCenter, HlaSetSpecification hlaSetSpecification, bool modelOnly)
{
try
{
string hlaOrSupertypeOrNull;
string inputPeptide = ExtractInputs(hlaSetSpecification, line, predictorCollection, out hlaOrSupertypeOrNull);
List <string> output = new List <string>();
foreach (List <Prediction> predictionList in predictorCollection.MaxProbabilityPredictions(showBy, inputPeptide, merLength, dOfCenter, hlaSetSpecification, hlaOrSupertypeOrNull, modelOnly).Values)
{
string outputLine = InsertMaterial(line, hlaSetSpecification.InputHeaderCollection().Length, Prediction.CollectionToString(predictionList, false, hlaSetSpecification.IncludeHlaInOutput()));
output.Add(outputLine);
}
return(output);
}
catch (Exception exception)
{
string errorString = SpecialFunctions.CreateTabString(
line,
string.Format("Error: {0}{1}", exception.Message, exception.InnerException == null ? "" : string.Format(" ({0})", exception.InnerException)));
List <string> output = new List <string>();
output.Add(errorString);
return(output);
}
}
