public void validate_pMC_CAW_ROfFx_nonzero_perturbation_one_layer_tissue()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfFxDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 11),
// set perturbed ops to reference ops
PerturbedOps = new List <OpticalProperties>()
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
new OpticalProperties(
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Mua * 2,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Musp * 1.1,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.G,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.N),
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from prior run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[1].Real - 0.303789), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[1].Imaginary - 0.036982), 0.000001);
}
public void validate_pMC_CAW_ROfRho_nonzero_perturbation_one_layer_tissue()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfRhoDetectorInput()
{
Rho = new DoubleRange(0.0, 10, 101),
// set perturbed ops to reference ops
PerturbedOps = new List <OpticalProperties>()
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
new OpticalProperties(
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Mua * 2,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Musp * 1.1,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.G,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.N),
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from linux run using above input and seeded the same
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_r[0] * _factor - 1.013156), 0.000001);
}
public void validate_pMC_CAW_ROfFx_zero_perturbation_one_layer_tissue()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfFxDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 11),
// set perturbed ops to reference ops
PerturbedOps = new List <OpticalProperties>()
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
TallySecondMoment = true
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from reference non-pMC run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[0].Real -
_referenceOutputOneLayerTissue.R_fx[0].Real), 0.00000000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[0].Imaginary -
_referenceOutputOneLayerTissue.R_fx[0].Imaginary), 0.00000000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx2[1].Real - 0.483629), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx2[1].Imaginary - 0.0), 0.000001); // imag of 2nd moment is 0
}
public void validate_photon_database_postprocessor_ROfRhoAndTime_results()
{
// DAW postprocssing
var DAWinput = GenerateReferenceDAWInput();
var onTheFlyDAWOutput = new MonteCarloSimulation(DAWinput).Run();
var DAWdatabase = PhotonDatabase.FromFile("DiffuseReflectanceDatabase");
var DAWpostProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.DiffuseReflectance,
_detectorInputs,
DAWdatabase,
onTheFlyDAWOutput.Input);
var postProcessedDAWOutput = DAWpostProcessor.Run();
ValidateROfRhoAndTime(onTheFlyDAWOutput, postProcessedDAWOutput);
// CAW postprocessing
var CAWinput = GenerateReferenceCAWInput();
var onTheFlyCAWOutput = new MonteCarloSimulation(CAWinput).Run();
var CAWdatabase = PhotonDatabase.FromFile("DiffuseReflectanceDatabase");
var CAWpostProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.DiffuseReflectance,
_detectorInputs,
CAWdatabase,
onTheFlyCAWOutput.Input);
var postProcessedCAWOutput = CAWpostProcessor.Run();
ValidateROfRhoAndTime(onTheFlyCAWOutput, postProcessedCAWOutput);
}
public void validate_pMC_DAW_ROfRhoAndTime_zero_perturbation_of_top_layer()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfRhoAndTimeDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 101),
Time = new DoubleRange(0.0, 1.0, 101),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_referenceInputTwoLayerTissue.TissueInput.Regions[0].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[1].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[2].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[3].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseTwoLayerTissue,
_referenceInputTwoLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from reference results
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_rt[0, 0] - _referenceOutputTwoLayerTissue.R_rt[0, 0]), 0.00000000001);
// validation value obtained from linux run using above input and seeded the same
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_rt[0, 0] * _factor - 61.5238307), 0.0000001);
}
public void validate_pMC_DAW_ROfXAndY_zero_perturbation_of_top_layer()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfXAndYDetectorInput()
{
X = new DoubleRange(-10.0, 10.0, 11),
Y = new DoubleRange(-10.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_referenceInputTwoLayerTissue.TissueInput.Regions[0].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[1].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[2].RegionOP,
_referenceInputTwoLayerTissue.TissueInput.Regions[3].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseTwoLayerTissue,
_referenceInputTwoLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from reference results
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_xy[0, 0] -
_referenceOutputTwoLayerTissue.R_xy[0, 0]), 0.00000000001);
// validation value obtained from prior run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_xy[0, 0] - 0.001097), 0.000001);
}
public void validate_pMC_DAW_ROfRho_zero_perturbation_one_layer_tissue()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfRhoDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 101),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
TallySecondMoment = true
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from reference non-pMC run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_r[0] - _referenceOutputOneLayerTissue.R_r[0]), 0.00000000001);
// validation value obtained from linux run using above input and seeded the same
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_r[0] * _factor - 0.615238307), 0.000000001);
// validation value based on previous run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_r2[0] - 20.022918), 0.000001);
Assert.AreEqual(postProcessedOutput.pMC_R_r_TallyCount, 89);
}
public void validate_pMC_DAW_ROfFxAndTime_zero_perturbation_one_layer_tissue()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfFxAndTimeDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 11),
Time = new DoubleRange(0.0, 1.0, 101),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP,
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from reference non-pMC run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Real -
_referenceOutputOneLayerTissue.R_fxt[1, 0].Real), 0.00000000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Imaginary -
_referenceOutputOneLayerTissue.R_fxt[1, 0].Imaginary), 0.00000000001);
// validation value obtained from prior run
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Real - 6.858014), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Imaginary - 0.339772), 0.000001);
}
public void validate_dMC_DAW_dROfRhodMua_produces_not_NaN_results()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new dMCdROfRhodMuaDetectorInput()
{
Rho = new DoubleRange(0.0, 10, 101),
// set perturbed ops to reference ops
PerturbedOps = new List <OpticalProperties>()
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
new OpticalProperties(
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Mua,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Musp,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.G,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.N),
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
},
new dMCdROfRhodMusDetectorInput()
{
Rho = new DoubleRange(0.0, 10, 101),
// set perturbed ops to reference ops
PerturbedOps = new List <OpticalProperties>()
{
_referenceInputOneLayerTissue.TissueInput.Regions[0].RegionOP,
new OpticalProperties(
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Mua,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.Musp,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.G,
_referenceInputOneLayerTissue.TissueInput.Regions[1].RegionOP.N),
_referenceInputOneLayerTissue.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
}
}
},
_databaseOneLayerTissue,
_referenceInputOneLayerTissue);
var postProcessedOutput = postProcessor.Run();
// validation value obtained from linux run using above input and seeded the same
Assert.AreNotEqual(Math.Abs(postProcessedOutput.dMCdMua_R_r[0]), double.NaN);
Assert.AreNotEqual(Math.Abs(postProcessedOutput.dMCdMus_R_r[0]), double.NaN);
Assert.AreEqual(postProcessedOutput.dMCdMua_R_r_TallyCount, 89);
Assert.AreEqual(postProcessedOutput.dMCdMus_R_r_TallyCount, 89);
}
public void validate_pMC_dMC_detector_NA_tallies_when_NA_is_0p3()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfRhoDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.3,
},
new pMCROfRhoAndTimeDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
Time = new DoubleRange(0.0, 1.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.3,
},
new pMCROfFxDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 5),
PerturbedOps = new OpticalProperties[] { // perturbed ops
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new int[] { 1 },
FinalTissueRegionIndex = 0,
NA = 0.3,
},
new pMCROfFxAndTimeDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 5),
Time = new DoubleRange(0.0, 1.0, 11),
PerturbedOps = new OpticalProperties[] { // perturbed ops
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new int[] { 1 },
FinalTissueRegionIndex = 0,
NA = 0.3,
},
new dMCdROfRhodMuaDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.3,
},
new dMCdROfRhodMusDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.3,
},
},
_pMCDatabase,
_inputForPMC);
var postProcessedOutput = postProcessor.Run();
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_r[0] - 0.003170), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_rt[0, 0] - 0.031704), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[1].Real - 0.019227), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fx[1].Imaginary - 0.012466), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Real - 0.252024), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.pMC_R_fxt[1, 0].Imaginary - 0.089027), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.dMCdMua_R_r[0] + 0.001005), 0.000001);
Assert.Less(Math.Abs(postProcessedOutput.dMCdMus_R_r[0] - 0.000263), 0.000001);
}
public void validate_pMC_dMC_detector_NA_tallies_are_zero_when_NA_is_0()
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
new List <IDetectorInput>()
{
new pMCROfRhoDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.0,
},
new pMCROfRhoAndTimeDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
Time = new DoubleRange(0.0, 1.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.0,
},
new pMCROfFxDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 5),
PerturbedOps = new OpticalProperties[] { // perturbed ops
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new int[] { 1 },
FinalTissueRegionIndex = 0,
NA = 0.0,
},
new pMCROfFxAndTimeDetectorInput()
{
Fx = new DoubleRange(0.0, 0.5, 5),
Time = new DoubleRange(0.0, 1.0, 11),
PerturbedOps = new OpticalProperties[] { // perturbed ops
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new int[] { 1 },
FinalTissueRegionIndex = 0,
NA = 0.0,
},
new dMCdROfRhodMuaDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.0,
},
new dMCdROfRhodMusDetectorInput()
{
Rho = new DoubleRange(0.0, 10.0, 11),
PerturbedOps = new List <OpticalProperties>() // perturbed ops
{
_inputForPMC.TissueInput.Regions[0].RegionOP,
_inputForPMC.TissueInput.Regions[1].RegionOP,
_inputForPMC.TissueInput.Regions[2].RegionOP
},
PerturbedRegionsIndices = new List <int>()
{
1
},
FinalTissueRegionIndex = 0,
NA = 0.0,
},
},
_pMCDatabase,
_inputForPMC);
var postProcessedOutput = postProcessor.Run();
Assert.AreEqual(postProcessedOutput.pMC_R_r[0], 0.0);
Assert.AreEqual(postProcessedOutput.pMC_R_rt[0, 0], 0.0);
Assert.AreEqual(postProcessedOutput.pMC_R_fx[0].Real, 0.0);
Assert.AreEqual(postProcessedOutput.pMC_R_fx[0].Imaginary, 0.0);
Assert.AreEqual(postProcessedOutput.pMC_R_fxt[0, 0].Real, 0.0);
Assert.AreEqual(postProcessedOutput.pMC_R_fxt[0, 0].Imaginary, 0.0);
Assert.AreEqual(postProcessedOutput.dMCdMua_R_r[0], 0.0);
Assert.AreEqual(postProcessedOutput.dMCdMus_R_r[0], 0.0);
}
// need to work on following
/// <summary>
/// Runs the Monte Carlo Post-processor
/// </summary>
public static void RunPostProcessor(PostProcessorInput input, string outputFolderPath)
{
// locate root folder for output, creating it if necessary
var path = string.IsNullOrEmpty(outputFolderPath)
? Path.GetFullPath(Directory.GetCurrentDirectory())
: Path.GetFullPath(outputFolderPath);
if (!Directory.Exists(path))
{
Directory.CreateDirectory(path);
}
// locate destination folder for output, creating it if necessary
var resultsFolder = Path.Combine(path, input.OutputName);
if (!Directory.Exists(resultsFolder))
{
Directory.CreateDirectory(resultsFolder);
}
SimulationOutput postProcessedOutput = null;
var databaseGenerationInputFile = SimulationInput.FromFile(Path.Combine(input.InputFolder, input.DatabaseSimulationInputFilename + ".txt"));
// check for pMC tallies first because could have ReflectanceTallies mixed in and want to load CollisionInfo
// Why not mirror the "on-the-fly" code, and allow for all kinds of detector inputs simultaneously? (dc 12/21/2011)
if (input.DetectorInputs.Where(di => di.TallyDetails.IspMCReflectanceTally).Any())
{
IList <IDetectorInput> pMCDetectorInputs;
pMCDetectorInputs = input.DetectorInputs;
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.pMCDiffuseReflectance,
pMCDetectorInputs,
PhotonDatabaseFactory.GetpMCDatabase( // database filenames are assumed to be convention
VirtualBoundaryType.pMCDiffuseReflectance,
input.InputFolder),
databaseGenerationInputFile
);
postProcessedOutput = postProcessor.Run();
}
else if (input.DetectorInputs.Where(di => di.TallyDetails.IsReflectanceTally).Any())
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.DiffuseReflectance,
input.DetectorInputs,
PhotonDatabaseFactory.GetPhotonDatabase( //database filenames are assumed to be convention
VirtualBoundaryType.DiffuseReflectance,
input.InputFolder),
databaseGenerationInputFile
);
postProcessedOutput = postProcessor.Run();
}
else if (input.DetectorInputs.Where(di => di.TallyDetails.IsTransmittanceTally).Any())
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.DiffuseTransmittance,
input.DetectorInputs,
PhotonDatabaseFactory.GetPhotonDatabase( //database filenames are assumed to be convention
VirtualBoundaryType.DiffuseTransmittance,
input.InputFolder),
databaseGenerationInputFile
);
postProcessedOutput = postProcessor.Run();
}
else if (input.DetectorInputs.Where(di => di.TallyDetails.IsSpecularReflectanceTally).Any())
{
var postProcessor = new PhotonDatabasePostProcessor(
VirtualBoundaryType.SpecularReflectance,
input.DetectorInputs,
PhotonDatabaseFactory.GetPhotonDatabase( //database filenames are assumed to be convention
VirtualBoundaryType.SpecularReflectance,
input.InputFolder),
databaseGenerationInputFile
);
postProcessedOutput = postProcessor.Run();
}
var folderPath = input.OutputName;
if (!Directory.Exists(folderPath))
{
Directory.CreateDirectory(folderPath);
}
// save input file to output folder with results
input.ToFile(Path.Combine(resultsFolder, input.OutputName + ".txt"));
// save database generation input file to output folder
databaseGenerationInputFile.ToFile(Path.Combine(resultsFolder, input.OutputName + "_database_infile.txt"));
if (postProcessedOutput != null)
{
foreach (var result in postProcessedOutput.ResultsDictionary.Values)
{
// save all detector data to the specified folder
DetectorIO.WriteDetectorToFile(result, folderPath);
}
}
}