private void buttonGo_Click(object sender, EventArgs e) { PatternTools.DNA2Protein translator = new PatternTools.DNA2Protein(); int counter = 0; foreach (string s in translator.Translate6(textBoxInput.Text)) { counter++; richTextBoxOutput.AppendText("Frame " + counter + "\n"); richTextBoxOutput.AppendText(s + "\n\n"); } }
private void buttonWork_Click(object sender, EventArgs e) { buttonWork.Text = "Busy!"; //First, lets get the input DB in RAM PatternTools.FastaParser.FastaFileParser fp = new PatternTools.FastaParser.FastaFileParser(); fp.ParseFile(new StreamReader(textBoxInputFile.Text), false, PatternTools.FastaParser.DBTypes.IDSpaceDescription); if (checkBoxQualityFilters.Checked) { int itemsRemovedMinNo = fp.MyItems.RemoveAll(a => a.Sequence.Length <= (int)numericUpDownMinNoNT.Value); labelNoNt.Text = itemsRemovedMinNo.ToString(); } else { labelNoNt.Text = "0"; } this.Update(); int itemsRemovedStopCoddons = 0; StreamWriter sw = new StreamWriter(textBoxOutput.Text); PatternTools.DNA2Protein translator = new PatternTools.DNA2Protein(); foreach (FastaItem fi in fp.MyItems) { List <string> translatedFrames = new List <string>(); if (radioButton3Frame.Checked) { translatedFrames = translator.Translate3(fi.Sequence); } else { translatedFrames = translator.Translate6(fi.Sequence); } for (int i = 0; i < translatedFrames.Count; i++) { if (checkBoxQualityFilters.Checked) { int noStopCodons = Regex.Matches(translatedFrames[i], Regex.Escape("*")).Count; Console.WriteLine(fi.SequenceIdentifier + " Frame{0} StopCodons: {1}", i, noStopCodons); if (noStopCodons >= (int)numericUpDownMaxNoStopCodons.Value) { itemsRemovedStopCoddons++; labelNoStopCodons.Text = itemsRemovedStopCoddons.ToString(); this.Update(); } } else { sw.WriteLine(fi.SequenceIdentifier + "_" + i); sw.WriteLine(translatedFrames[i]); } } } sw.Close(); Console.WriteLine("Done"); buttonWork.Text = "Go!"; }