public static PanelSetOrder CreatePanelSetOrder(YellowstonePathology.Business.PanelSet.Model.PanelSet panelSet)
{
Type panelSetType = Type.GetType(panelSet.PanelSetOrderClassName);
PanelSetOrder panelSetOrder = (PanelSetOrder)Activator.CreateInstance(panelSetType);
return(panelSetOrder);
}
public override void ToXml(XElement document)
{
PanelSetOrder panelSetOrder = this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
this.AddHeader(document, panelSetOrder, "Bone Marrow Summary");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("SURGICAL PATHOLOGY DIAGNOSIS: ", document, "F");
YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder surgicalTestOrder = this.m_AccessionOrder.PanelSetOrderCollection.GetSurgical();
this.AddNextObxElement("Reference Report No: " + surgicalTestOrder.ReportNo, document, "F");
foreach (YellowstonePathology.Business.Test.Surgical.SurgicalSpecimen surgicalSpecimen in surgicalTestOrder.SurgicalSpecimenCollection)
{
this.HandleLongString("Specimen: " + surgicalSpecimen.DiagnosisIdFormatted + " " + surgicalSpecimen.SpecimenOrder.Description, document, "F");
this.HandleLongString("Diagnosis: " + surgicalSpecimen.Diagnosis, document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("TESTING SUMMARY:", document, "F");
List <Business.Test.PanelSetOrder> testingSummaryList = this.m_AccessionOrder.PanelSetOrderCollection.GetBoneMarrowAccessionSummaryList(panelSetOrder.ReportNo, true);
int surgicalPanelSetId = new Test.Surgical.SurgicalTest().PanelSetId;
for (int idx = testingSummaryList.Count - 1; idx > -1; idx--)
{
Business.Test.PanelSetOrder pso = testingSummaryList[idx];
if (pso.PanelSetId != surgicalPanelSetId)
{
this.AddNextObxElement("Reference Report No: " + pso.ReportNo, document, "F");
this.AddNextObxElement("Test Name: " + pso.PanelSetName, document, "F");
string result = pso.ToResultString(this.m_AccessionOrder);
if (result == "The result string for this test has not been implemented.")
{
if (string.IsNullOrEmpty(pso.SummaryComment) == false)
{
result = pso.SummaryComment;
}
else
{
result = "Result reported separately.";
}
}
this.HandleLongString(result, document, "F");
this.AddNextObxElement("", document, "F");
}
}
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.BCRABLByFish.BCRABLByFishTestOrder panelSetOrder = (Business.Test.BCRABLByFish.BCRABLByFishTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.ProbeSetDetail = this.ProbeSetDetail;
panelSetOrder.NucleiScored = this.NucleiScored;
base.SetPreviousResults(pso);
}
public static void UnacceptResults(PanelSetOrder testOrder)
{
testOrder.Unaccept();
if (testOrder.PanelOrderCollection.GetAcceptedPanelCount() > 0)
{
YellowstonePathology.Business.Test.PanelOrder panelOrder = testOrder.PanelOrderCollection.GetLastAcceptedPanelOrder();
panelOrder.UnacceptResults();
}
}
public static PanelSetOrder CreatePanelSetOrder(string masterAccessionNo, string reportNo, string objectId,
YellowstonePathology.Business.PanelSet.Model.PanelSet panelSet,
bool distribute)
{
Type panelSetType = Type.GetType(panelSet.PanelSetOrderClassName);
PanelSetOrder panelSetOrder = (PanelSetOrder)Activator.CreateInstance(panelSetType, masterAccessionNo, reportNo, objectId, panelSet, distribute);
return(panelSetOrder);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.MPL.PanelSetOrderMPL panelSetOrder = (Business.Test.MPL.PanelSetOrderMPL)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Method = this.Method;
panelSetOrder.ASR = this.ASR;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.JAK2Exon1214.JAK2Exon1214TestOrder panelSetOrder = (Business.Test.JAK2Exon1214.JAK2Exon1214TestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Method = this.m_Method;
panelSetOrder.ASRComment = this.m_ASRComment;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.CKIT.CKITTestOrder panelSetOrder = (CKITTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Comment = this.m_Comment;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Method = this.m_Method;
panelSetOrder.TestDevelopment = this.m_TestDevelopment;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
PDL122C3TestOrder panelSetOrder = (PDL122C3TestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Method = this.Method;
panelSetOrder.Comment = this.Comment;
panelSetOrder.Interpretation = this.m_Interpretation;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.CalreticulinMutationAnalysis.CalreticulinMutationAnalysisTestOrder panelSetOrder = (Business.Test.CalreticulinMutationAnalysis.CalreticulinMutationAnalysisTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Percentage = this.Percentage;
panelSetOrder.Mutations = this.Mutations;
panelSetOrder.Method = this.Method;
panelSetOrder.ASR = this.ASR;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.BCRABLByPCR.BCRABLByPCRTestOrder panelSetOrder = (Business.Test.BCRABLByPCR.BCRABLByPCRTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.DetectedLogReduction = this.DetectedLogReduction;
panelSetOrder.FusionTranscriptType = this.FusionTranscriptType;
panelSetOrder.PercentBCRABL = this.PercentBCRABL;
panelSetOrder.Method = this.Method;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.JAK2V617F.JAK2V617FTestOrder panelSetOrder = (Business.Test.JAK2V617F.JAK2V617FTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Method = this.Method;
panelSetOrder.Disclosure = this.Disclosure;
panelSetOrder.Comment = this.Comment;
panelSetOrder.Reference = this.Reference;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder panelSetOrder)
{
Business.Test.MPNStandardReflex.PanelSetOrderMPNStandardReflex panelSetOrderMPNStandardReflex = (Business.Test.MPNStandardReflex.PanelSetOrderMPNStandardReflex)panelSetOrder;
panelSetOrderMPNStandardReflex.JAK2V617FResult = this.JAK2V617FResult;
panelSetOrderMPNStandardReflex.JAK2Exon1214Result = this.m_JAK2Exon1214Result;
panelSetOrderMPNStandardReflex.MPLResult = this.m_MPLResult;
panelSetOrderMPNStandardReflex.Comment = this.m_Comment;
panelSetOrderMPNStandardReflex.Interpretation = this.m_Interpretation;
panelSetOrderMPNStandardReflex.Method = this.m_Method;
base.SetPreviousResults(panelSetOrder);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
ChromosomeAnalysisTestOrder panelSetOrder = (ChromosomeAnalysisTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Karyotype = this.Karyotype;
panelSetOrder.Comment = this.m_Comment;
panelSetOrder.CultureType = this.m_CultureType;
panelSetOrder.ASR = this.m_ASR;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder panelSetOrder = (Business.Test.BRAFMutationAnalysis.BRAFMutationAnalysisTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.Indication = this.m_Indication;
panelSetOrder.IndicationComment = this.m_IndicationComment;
panelSetOrder.Comment = this.m_Comment;
panelSetOrder.Method = this.m_Method;
panelSetOrder.ReportDisclaimer = this.m_ReportDisclaimer;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
ROS1ByFISHTestOrder panelSetOrder = (ROS1ByFISHTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.ReferenceRange = this.m_ReferenceRange;
panelSetOrder.ProbeSetDetail = this.m_ProbeSetDetail;
panelSetOrder.NucleiScored = this.m_NucleiScored;
panelSetOrder.Method = this.m_Method;
panelSetOrder.ReportDisclaimer = this.m_ReportDisclaimer;
panelSetOrder.TumorNucleiPercentage = this.m_TumorNucleiPercentage;
base.SetPreviousResults(pso);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
EGFRMutationAnalysisTestOrder panelSetOrder = (EGFRMutationAnalysisTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Mutation = this.m_Mutation;
panelSetOrder.Method = this.m_Method;
panelSetOrder.Indication = this.m_Indication;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.MicrodissectionPerformed = this.m_MicrodissectionPerformed;
panelSetOrder.Comment = this.Comment;
panelSetOrder.ReportDisclaimer = this.m_ReportDisclaimer;
base.SetPreviousResults(pso);
}
public TestResult GetResult(PanelSetOrder panelSetOrder)
{
TestResult result = null;
foreach (TestResult testResult in this)
{
if (testResult.ResultCode == panelSetOrder.ResultCode)
{
result = testResult;
break;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
ROS1ByFISHTestOrder pso = (ROS1ByFISHTestOrder)panelSetOrder;
this.DoesFinalSummaryResultMatch(accessionOrder, pso.Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskSetPreviousResults;
}
}
return(result);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (EGFRMutationAnalysisTestOrder)panelSetOrder;
this.DoesFinalSummaryResultMatch(accessionOrder, egfrMutationAnalysisTestOrder.Result, result);
if (result.Status == Audit.Model.AuditStatusEnum.Warning)
{
result.Message += AskSetPreviousResults;
}
}
return(result);
}
public override void SetPreviousResults(PanelSetOrder pso)
{
ALKForNSCLCByFISHTestOrder panelSetOrder = (ALKForNSCLCByFISHTestOrder)pso;
panelSetOrder.Result = this.m_Result;
panelSetOrder.Interpretation = this.m_Interpretation;
panelSetOrder.ReferenceRange = this.m_ReferenceRange;
panelSetOrder.ProbeSetDetail = this.m_ProbeSetDetail;
panelSetOrder.NucleiScored = this.m_NucleiScored;
panelSetOrder.NucleiPercent = this.m_NucleiPercent;
panelSetOrder.Fusions = this.m_Fusions;
panelSetOrder.Method = this.Method;
panelSetOrder.ReportDisclaimer = this.m_ReportDisclaimer;
panelSetOrder.ThreeFPercentage = this.m_ThreeFPercentage;
panelSetOrder.ALKGeneAmplification = this.m_ALKGeneAmplification;
panelSetOrder.TumorNucleiPercentage = this.m_TumorNucleiPercentage;
base.SetPreviousResults(pso);
}
public override Audit.Model.AuditResult IsOkToSetPreviousResults(PanelSetOrder panelSetOrder, AccessionOrder accessionOrder)
{
Audit.Model.AuditResult result = base.IsOkToSetPreviousResults(panelSetOrder, accessionOrder);
if (result.Status == Audit.Model.AuditStatusEnum.OK)
{
this.AreComponentTestOrdersAccepted(accessionOrder, result);
}
/*if (result.Status == Audit.Model.AuditStatusEnum.OK)
* {
* this.DoComponentTestResultsMatchPreviousResults(accessionOrder, (EGFRToALKReflexAnalysisTestOrder)panelSetOrder, result);
* if (result.Status == Audit.Model.AuditStatusEnum.Warning)
* {
* result.Message += AskSetPreviousResults;
* }
* }*/
return(result);
}
private void AddTestOrders(PanelSetOrder panelSetOrder)
{
foreach (PanelOrder panelOrder in panelSetOrder.PanelOrderCollection)
{
foreach (YellowstonePathology.Business.Test.Model.TestOrder testOrder in panelOrder.TestOrderCollection)
{
if (testOrder.TestName != "H and E")
{
PathologistTestOrderListItem item = new PathologistTestOrderListItem();
string description = testOrder.AliquotOrder.Display;
if (string.IsNullOrEmpty(description))
{
description = string.Empty;
}
item.AliquotDescription = description;
item.TestName = testOrder.TestName;
item.TestOrderDate = panelOrder.OrderDate.Value.ToShortDateString();
this.Add(item);
}
}
}
}
public InvasiveBreastPanelResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
YellowstonePathology.Business.Test.InvasiveBreastPanel.InvasiveBreastPanelTest panelSetInvasiveBreastPanel = new YellowstonePathology.Business.Test.InvasiveBreastPanel.InvasiveBreastPanelTest();
this.m_InvasiveBreastPanel = (YellowstonePathology.Business.Test.InvasiveBreastPanel.InvasiveBreastPanel) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetInvasiveBreastPanel.PanelSetId);
this.m_InvasiveBreastPanel.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_SpecimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_InvasiveBreastPanel.OrderedOnId);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(46) == true)
{
this.m_PanelSetOrderHer2ByIsh = (YellowstonePathology.Business.Test.HER2AmplificationByISH.HER2AmplificationByISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(46);
this.m_HER2ResultString = this.m_PanelSetOrderHer2ByIsh.Result;
}
else
{
Test.HER2AmplificationByISHSendOut.HER2AmplificationByISHSendOutTest test = new HER2AmplificationByISHSendOut.HER2AmplificationByISHSendOutTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(test.PanelSetId, this.m_InvasiveBreastPanel.OrderedOnId, true) == true)
{
PanelSetOrder sendoutHer2 = this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(test.PanelSetId, this.m_InvasiveBreastPanel.OrderedOnId, true);
this.m_HER2ResultString = "Reported separately (" + sendoutHer2.ReportNo + ")";
}
}
YellowstonePathology.Business.Test.ErPrSemiQuantitative.ErPrSemiQuantitativeTest erPrSemiQuantitativeTest = new YellowstonePathology.Business.Test.ErPrSemiQuantitative.ErPrSemiQuantitativeTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.HasSurgical() == true && this.m_AccessionOrder.PanelSetOrderCollection.Exists(erPrSemiQuantitativeTest.PanelSetId) == false)
{
this.m_HasSurgical = true;
YellowstonePathology.Business.Test.Surgical.SurgicalTest panelSetSurgical = new YellowstonePathology.Business.Test.Surgical.SurgicalTest();
YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder panelSetOrderSurgical = (YellowstonePathology.Business.Test.Surgical.SurgicalTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetSurgical.PanelSetId);
this.m_SurgicalSpecimen = panelSetOrderSurgical.SurgicalSpecimenCollection.GetBySpecimenOrderId(this.m_SpecimenOrder.SpecimenOrderId);
YellowstonePathology.Business.Test.Model.TestOrder testOrderER = this.m_AccessionOrder.PanelSetOrderCollection.GetTestOrderByTestId("99");
this.m_StainResultER = panelSetOrderSurgical.GetStainResult(testOrderER.TestOrderId);
this.m_ERResultString = this.m_StainResultER.Result;
YellowstonePathology.Business.Test.Model.TestOrder testOrderPR = this.m_AccessionOrder.PanelSetOrderCollection.GetTestOrderByTestId("145");
this.m_StainResultPR = panelSetOrderSurgical.GetStainResult(testOrderPR.TestOrderId);
this.m_PRResultString = this.m_StainResultPR.Result;
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(erPrSemiQuantitativeTest.PanelSetId) == true)
{
this.m_PanelSetOrderErPrSemiQuantitative = (YellowstonePathology.Business.Test.ErPrSemiQuantitative.ErPrSemiQuantitativeTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(erPrSemiQuantitativeTest.PanelSetId);
this.m_ERResultString = this.m_PanelSetOrderErPrSemiQuantitative.ErResult;
this.m_PRResultString = this.m_PanelSetOrderErPrSemiQuantitative.PrResult;
}
if (this.m_HER2ResultString == YellowstonePathology.Business.Test.HER2AmplificationByISH.HER2AmplificationByISHTestOrder.EquivocalResult)
{
this.m_IsHER2ByFISHRequired = true;
}
YellowstonePathology.Business.PanelSet.Model.PanelSetHer2AmplificationByFishRetired3 panelSetHer2AmplificationByFishRetired3 = new YellowstonePathology.Business.PanelSet.Model.PanelSetHer2AmplificationByFishRetired3();
YellowstonePathology.Business.Test.Her2AmplificationByFish.Her2AmplificationByFishTest panelSetHer2AmplificationByFish = new YellowstonePathology.Business.Test.Her2AmplificationByFish.Her2AmplificationByFishTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(panelSetHer2AmplificationByFishRetired3.PanelSetId) == true)
{
this.m_HER2ByFISHHasBeenOrdered = true;
YellowstonePathology.Business.Test.PanelSetOrder panelSetOrder = this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetHer2AmplificationByFishRetired3.PanelSetId);
this.m_HER2ByFISHResultString = "Result in Report " + panelSetOrder.ReportNo;
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(panelSetHer2AmplificationByFish.PanelSetId) == true)
{
this.m_HER2ByFISHHasBeenOrdered = true;
YellowstonePathology.Business.Test.Her2AmplificationByFish.PanelSetOrderHer2AmplificationByFish panelSetOrderHer2AmplificationByFish = (YellowstonePathology.Business.Test.Her2AmplificationByFish.PanelSetOrderHer2AmplificationByFish) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSetHer2AmplificationByFish.PanelSetId);
this.m_HER2ByFISHResultString = panelSetOrderHer2AmplificationByFish.Result;
}
else
{
this.m_HER2ByFISHResultString = "Not Required.";
}
}
