private List <double> CreateSVMMatrices()
{
List <double> matrixes = new List <double>();
int Peptide = 0;
if (PeptideSequence != null && PeptideSequence != "")
{
Peptide = 1;
}
int fuc = 1;
int CoreYPeaks = CoreIDPeak.Count;
float CoreYScore = CoreScore;
if (!IUPACString.EndsWith("(DeHex-)HexNAc"))
{
CoreYPeaks = CoreIDPeak.Count - CoreIDPeak.Where(x => x.Item2.Contains("deHex")).ToList().Count;
foreach (var core in CoreIDPeak.Where(x => x.Item2.EndsWith("(DeHex-)HexNAc")))
{
CoreYScore -= core.Item1.Intensity;
}
fuc = 0;
}
matrixes.Add(Peptide);
matrixes.Add(fuc);
matrixes.Add(NoOfTotalGlycan);
matrixes.Add(Convert.ToDouble(PPM.ToString("0.000")));
//matrixes.Add(CoreYPeaks);
//matrixes.Add(Convert.ToDouble(CoreYScore.ToString("0.000")));
matrixes.Add(BranchIDPeak.Count);
matrixes.Add(Convert.ToDouble(BranchScore.ToString("0.000")));
var CorePeaks = CoreIDPeak.Where(x => x.Item2 == "HexNAc").ToList();
matrixes.Add(Convert.ToDouble(CorePeaks.Count != 0 ? CorePeaks[0].Item1.Intensity.ToString("0.0000") : "0"));
CorePeaks = CoreIDPeak.Where(x => x.Item2 == "HexNAc-HexNAc").ToList();
matrixes.Add(Convert.ToDouble(CorePeaks.Count != 0 ? CorePeaks[0].Item1.Intensity.ToString("0.0000") : "0"));
CorePeaks = CoreIDPeak.Where(x => x.Item2 == "HexNAc-HexNAc-Hex").ToList();
matrixes.Add(Convert.ToDouble(CorePeaks.Count != 0 ? CorePeaks[0].Item1.Intensity.ToString("0.0000") : "0"));
CorePeaks = CoreIDPeak.Where(x => x.Item2 == "HexNAc-HexNAc-Hex-Hex").ToList();
matrixes.Add(Convert.ToDouble(CorePeaks.Count != 0 ? CorePeaks[0].Item1.Intensity.ToString("0.0000") : "0"));
CorePeaks = CoreIDPeak.Where(x => x.Item2 == "HexNAc-HexNAc-Hex-(Hex-)Hex").ToList();
matrixes.Add(Convert.ToDouble(CorePeaks.Count != 0 ? CorePeaks[0].Item1.Intensity.ToString("0.0000") : "0"));
//if (MatchWithPrecursorMW)
//{
// matrixes.Add(1);
//}
//else
//{
// matrixes.Add(0);
//}
return(matrixes);
}