public static List <AllergyAdverseEvent> GetAllergyAdverseEvents(this POCD_MT000040ClinicalDocument cda, Client client)
{
var structuredBody = cda?.component?.Item as POCD_MT000040StructuredBody;
return(structuredBody?.component?.FirstOrDefault(c => c.section?.code?.code == LoincConstants.ALLERGIES)
?.section?.GetAllergyAdverseEventsFromComponentSection(client));
}
public static List <DiagnosisProblem> GetDiagnosisProblems(this POCD_MT000040ClinicalDocument cda, Client client)
{
var structuredBody = cda?.component?.Item as POCD_MT000040StructuredBody;
return(structuredBody?.component?.FirstOrDefault(c => c.section?.code?.code == LoincConstants.PROBLEMLIST)
?.section?.GetDiagnosisProblemsFromComponentSection(client));
}
public RawAplDocument ToRawDocument()
{
RawAplDocument returnDoc = new RawAplDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** This is the list of body sections
List <POCD_MT000040Component3> components = new List <POCD_MT000040Component3>();
// *** After all sections are added, add as array ***
POCD_MT000040StructuredBody body = arg.component.Item as POCD_MT000040StructuredBody;
// *** Add existing ***
components.AddRange(body.component);
// *** Add lab results ***
foreach (var section in this.Sections)
{
POCD_MT000040Component3 labResults = section.ToPocdComponent();
if (labResults != null)
{
components.Add(labResults);
}
}
body.component = components.ToArray();
return(returnDoc);
}
public RawApeDocument ToRawDocument()
{
RawApeDocument returnDoc = new RawApeDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** This is the list of body sections
List <POCD_MT000040Component3> components = new List <POCD_MT000040Component3>();
// *** After all sections are added, add as array ***
POCD_MT000040StructuredBody body = arg.component.Item as POCD_MT000040StructuredBody;
// *** Add existing ***
components.AddRange(body.component);
// *** Add patient education ***
POCD_MT000040Component3 patientEducation = this.PatientEducationSection.ToPocdComponent();
if (patientEducation != null)
{
components.Add(patientEducation);
}
body.component = components.ToArray();
return(returnDoc);
}
public static List <Encounter> GetEncounters(this POCD_MT000040ClinicalDocument cda, Client client)
{
var structuredBody = cda?.component?.Item as POCD_MT000040StructuredBody;
return(structuredBody?.component?.FirstOrDefault(c => c.section?.code?.code == LoincConstants.ENCOUNTERS)
?.section?.GetEncountersFromComponentSection(client));
}
private string ExtractRecipient(POCD_MT000040ClinicalDocument doc)
{
// *** Gets the recipient string from a clinical doc ***
string returnValue = "";
// *** Create a working recipient ***
CdaRecipient tempRecipient = new CdaRecipient();
// *** Check for existence and drill down ***
if (doc.informationRecipient != null)
{
if (doc.informationRecipient.Length > 0)
{
if (doc.informationRecipient[0].intendedRecipient != null)
{
// *** Organization***
if (doc.informationRecipient[0].intendedRecipient.receivedOrganization != null)
{
if (doc.informationRecipient[0].intendedRecipient.receivedOrganization.name != null)
{
if (doc.informationRecipient[0].intendedRecipient.receivedOrganization.name.Length > 0)
{
if (doc.informationRecipient[0].intendedRecipient.receivedOrganization.name[0].Text != null)
{
tempRecipient.Organization = doc.informationRecipient[0].intendedRecipient.receivedOrganization.name[0].Text[0];
}
}
}
}
// *** Person Name ***
if (doc.informationRecipient[0].intendedRecipient.informationRecipient != null)
{
if (doc.informationRecipient[0].intendedRecipient.informationRecipient.name != null)
{
string[] names = GetName(doc.informationRecipient[0].intendedRecipient.informationRecipient.name);
tempRecipient.FirstName = names[0];
tempRecipient.LastName = names[1];
}
}
// *** Set result ***
returnValue = tempRecipient.ToString();
}
}
}
return(returnValue);
}
public RawXdriDocument ToRawDocument()
{
RawXdriDocument returnDoc = new RawXdriDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** Add image report ***
arg.component = this.ImageReport.ToPocdComponent();
return(returnDoc);
}
public static List <Medication> GetMedications(this POCD_MT000040ClinicalDocument cda, Client client)
{
var allergyAdverseEvents = cda.GetAllergyAdverseEvents(client);
var encounters = cda.GetEncounters(client);
var dischargeDateRange = (from encounter in encounters
where !string.IsNullOrWhiteSpace(encounter.DischargeDisposition?.Value)
select encounter.VisitDateRange).FirstOrDefault();
var structuredBody = cda?.component?.Item as POCD_MT000040StructuredBody;
return(structuredBody?.component?.FirstOrDefault(c => c.section?.code?.code == LoincConstants.MEDICATIONS)
?.section?.GetMedicationsFromComponentSection(client, allergyAdverseEvents, dischargeDateRange));
}
private POCD_MT000040ClinicalDocument DeserializeContent(string content)
{
POCD_MT000040ClinicalDocument returnDocument = null;
// *** Create a generic CDA serializer ***
XmlSerializer serializer = new XmlSerializer(typeof(POCD_MT000040ClinicalDocument));
// *** Create an xml reader ***
using (XmlReader xmlReader = XmlReader.Create(new StringReader(content)))
{
// *** Check if it can deserialize ***
if (serializer.CanDeserialize(xmlReader))
{
// *** Deserialize ***
returnDocument = (POCD_MT000040ClinicalDocument)serializer.Deserialize(xmlReader);
}
}
return(returnDocument);
}
/// MDHT operation: returns all sections
public List <POCD_MT000040Section> getAllSections(POCD_MT000040ClinicalDocument clinicalDocument)
{
List <POCD_MT000040Section> allSections = new List <POCD_MT000040Section>();
POCD_MT000040Component2 component2 = clinicalDocument.component;
if (component2 != null)
{
POCD_MT000040StructuredBody structuredBody = component2.structuredBody;
if (structuredBody != null)
{
foreach (POCD_MT000040Component3 component3 in structuredBody.component)
{
POCD_MT000040Section section = component3.section;
if (section != null)
{
allSections.AddRange(getSections(section));
}
}
}
}
return(allSections);
}
public RawApsDocument ToRawDocument()
{
RawApsDocument returnDoc = new RawApsDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** This is the list of body sections
List <POCD_MT000040Component3> components = new List <POCD_MT000040Component3>();
// *** After all sections are added, add as array ***
POCD_MT000040StructuredBody body = arg.component.Item as POCD_MT000040StructuredBody;
// *** Add existing ***
components.AddRange(body.component);
// *** Add advance directive ***
POCD_MT000040Component3 advanceDirective = this.AdvanceDirectiveSection.ToPocdComponent();
if (advanceDirective != null)
{
components.Add(advanceDirective);
}
// *** Add care plan ***
POCD_MT000040Component3 carePlan = this.CarePlanSection.ToPocdComponent();
if (carePlan != null)
{
components.Add(carePlan);
}
// *** Add problems ***
POCD_MT000040Component3 problems = this.ProblemsSection.ToPocdComponent();
if (problems != null)
{
components.Add(problems);
}
// *** Add medications ***
POCD_MT000040Component3 meds = this.MedicationsSection.ToPocdComponent();
if (meds != null)
{
components.Add(meds);
}
// *** Add edd ***
POCD_MT000040Component3 edd = this.EstimatedDeliveryDatesSection.ToPocdComponent();
if (edd != null)
{
components.Add(edd);
}
// *** Add antepartum visit summary ***
POCD_MT000040Component3 visit = this.AntepartumVisitSummarySection.ToPocdComponent();
if (visit != null)
{
components.Add(visit);
}
body.component = components.ToArray();
return(returnDoc);
}
public RawAphpDocument ToRawDocument()
{
// *** Converts this object to a raw APHP document ***
RawAphpDocument returnDoc = new RawAphpDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** This is the list of body sections
List <POCD_MT000040Component3> components = new List <POCD_MT000040Component3>();
// *** After all sections are added, add as array ***
POCD_MT000040StructuredBody body = arg.component.Item as POCD_MT000040StructuredBody;
// *** Add existing ***
components.AddRange(body.component);
// *** Add chief complaint ***
POCD_MT000040Component3 chiefComplaint = this.ChiefComplaint.ToPocdComponent();
if (chiefComplaint != null)
{
components.Add(chiefComplaint);
}
// *** Add history of present illness ***
POCD_MT000040Component3 presentIllness = this.HistoryOfPresentIllness.ToPocdComponent();
if (presentIllness != null)
{
components.Add(presentIllness);
}
// *** Add history of past illness ***
POCD_MT000040Component3 pastIllness = this.HistoryOfPastIllness.ToPocdComponent();
if (presentIllness != null)
{
components.Add(pastIllness);
}
// *** Add coded history of infection ***
POCD_MT000040Component3 infection = this.CodedHistoryOfInfection.ToPocdComponent();
if (infection != null)
{
components.Add(infection);
}
// *** Add pregnancy history ***
POCD_MT000040Component3 pregHist = this.PregnancyHistorySection.ToPocdComponent();
if (pregHist != null)
{
components.Add(pregHist);
}
// *** Add coded social history ***
POCD_MT000040Component3 socialHistory = this.SocialHistory.ToPocdComponent();
if (socialHistory != null)
{
components.Add(socialHistory);
}
// *** Add coded family medical history ***
POCD_MT000040Component3 familyMedicalHistory = this.FamilyMedicalHistory.ToPocdComponent();
if (familyMedicalHistory != null)
{
components.Add(familyMedicalHistory);
}
// *** Add review of systems ***
POCD_MT000040Component3 reviewOfSystems = this.ReviewOfSystems.ToPocdComponent();
if (reviewOfSystems != null)
{
components.Add(reviewOfSystems);
}
// *** Add coded physical exam ***
POCD_MT000040Component3 physicalExam = this.PhysicalExam.ToPocdComponent();
if (physicalExam != null)
{
components.Add(physicalExam);
}
body.component = components.ToArray();
return(returnDoc);
}
public RawPpvsDocument ToRawDocument()
{
RawPpvsDocument returnDoc = new RawPpvsDocument();
// *** Get base type ***
POCD_MT000040ClinicalDocument arg = returnDoc as POCD_MT000040ClinicalDocument;
// *** Populate from base ***
arg = this.AddRawDocumentData(arg);
// *** This is the list of body sections
List <POCD_MT000040Component3> components = new List <POCD_MT000040Component3>();
// *** After all sections are added, add as array ***
POCD_MT000040StructuredBody body = arg.component.Item as POCD_MT000040StructuredBody;
// *** Add existing ***
components.AddRange(body.component);
// *** Add Labor & Delivery Events ***
POCD_MT000040Component3 laborDelivery = this.LaborDeliveryEvents.ToPocdComponent();
if (laborDelivery != null)
{
components.Add(laborDelivery);
}
// *** Add PP Hosp Tx ***
POCD_MT000040Component3 ppHospTx = this.PostpartumHospitalizationTreatment.ToPocdComponent();
if (ppHospTx != null)
{
components.Add(ppHospTx);
}
// *** Add care plan ***
POCD_MT000040Component3 carePlan = this.CarePlanSection.ToPocdComponent();
if (carePlan != null)
{
components.Add(carePlan);
}
// *** Add problems ***
POCD_MT000040Component3 problems = this.ProblemsSection.ToPocdComponent();
if (problems != null)
{
components.Add(problems);
}
// *** Add history of present illness ***
POCD_MT000040Component3 presentIllness = this.HistoryOfPresentIllness.ToPocdComponent();
if (presentIllness != null)
{
components.Add(presentIllness);
}
// *** Add coded social history ***
POCD_MT000040Component3 socialHistory = this.SocialHistory.ToPocdComponent();
if (socialHistory != null)
{
components.Add(socialHistory);
}
// *** Add coded physical exam ***
POCD_MT000040Component3 physicalExam = this.PhysicalExam.ToPocdComponent();
if (physicalExam != null)
{
components.Add(physicalExam);
}
// *** Add medications ***
POCD_MT000040Component3 meds = this.MedicationsSection.ToPocdComponent();
if (meds != null)
{
components.Add(meds);
}
// *** Add Newborn Status ***
if (this.NewbornStatusSections.Count > 0)
{
foreach (var item in this.NewbornStatusSections.Values)
{
POCD_MT000040Component3 stat = item.ToPocdComponent();
components.Add(stat);
}
}
// *** Add Newborn Delivery Info ***
if (this.NewbornDeliveryInfoSections.Count > 0)
{
foreach (var item in this.NewbornDeliveryInfoSections.Values)
{
POCD_MT000040Component3 stat = item.ToPocdComponent();
components.Add(stat);
}
}
// *** Add Newborn Care Plan ***
if (this.NewbornCarePlanSections.Count > 0)
{
foreach (var item in this.NewbornCarePlanSections.Values)
{
POCD_MT000040Component3 stat = item.ToPocdComponent();
components.Add(stat);
}
}
body.component = components.ToArray();
return(returnDoc);
}
//public abstract string ToCdaXml();
protected POCD_MT000040ClinicalDocument AddRawDocumentData(POCD_MT000040ClinicalDocument rawDoc)
{
// *** Set the realm to US ***
//rawDoc.realmCode = new List<CS>();
//rawDoc.realmCode.Add(new CS() { code = "US" });
// *** All documents will have this type ***
rawDoc.typeId = new POCD_MT000040InfrastructureRoottypeId()
{
root = "2.16.840.1.113883.1.3", extension = "POCD_HD000040"
};
// *** Date/Time of Creation ***
//<effectiveTime value='20000407130000+0500'/>
rawDoc.effectiveTime = new TS()
{
value = DateTime.Now.ToString(RawCdaDocument.CdaDateFormat)
};
// *** Confidentiality ***
//<confidentialityCode code='N' codeSystem='2.16.840.1.113883.5.25'/>
rawDoc.confidentialityCode = new CE()
{
code = "N", codeSystem = "2.16.840.1.113883.5.25"
};
// *** Language ***
//<languageCode code='en-US'/>
rawDoc.languageCode = new CS()
{
code = "en-US"
};
// *** Set id ***
rawDoc.id = new II()
{
root = this.DocumentId
};
// *** Record Target ***
POCD_MT000040RecordTarget rt = this.RecordTarget.ToPocdRecordTarget();
rawDoc.recordTarget = new POCD_MT000040RecordTarget[] { rt };
// *** Information Recipient ***
rawDoc.informationRecipient = this.Recipient.ToPocdRecipient();
// *** Participants ***
rawDoc.participant = this.Participants.ToPocdParticpantArray();
// *** Authors ***
List <POCD_MT000040Author> authorList = new List <POCD_MT000040Author>();
// *** Device Author ***
if (!this.DeviceAuthor.IsEmpty)
{
POCD_MT000040Author pocdDevAuthor = this.DeviceAuthor.ToPocdAuthor();
authorList.Add(pocdDevAuthor);
}
// *** Author - Current User ***
POCD_MT000040Author pocdAuthor = this.Author.ToPocdAuthor();
authorList.Add(pocdAuthor);
rawDoc.author = authorList.ToArray();
// *** Custodian ***
rawDoc.custodian = this.Custodian.ToPocdCustodian();
// *** Documentation Of ***
rawDoc.documentationOf = new POCD_MT000040DocumentationOf[] { this.DocumentationOf.ToPocdDocumentationOf() };
// *** Document Body ***
rawDoc.component = new POCD_MT000040Component2();
POCD_MT000040StructuredBody body = new POCD_MT000040StructuredBody();
// *** Create list of component/sections ***
List <POCD_MT000040Component3> componentList = new List <POCD_MT000040Component3>();
// *** Add allergy section ***
POCD_MT000040Component3 allergySection = this.Allergies.ToPocdComponent();
if (allergySection != null)
{
componentList.Add(allergySection);
}
// TODO: Add additional sections here...
// *** Add the sections/component to body ***
body.component = componentList.ToArray();
// *** Add body ***
rawDoc.component.Item = body;
return(rawDoc);
}
public static Client GetClient(this POCD_MT000040ClinicalDocument cda)
{
return(cda?.recordTarget?.FirstOrDefault()?.patientRole?.GetClientFromPatientRole());
}