public ICommand ExtractIndividualsFromPopulationCommand(Population population, IndividualExtractionOptions individualExtractionOptions)
{
if (population.IsAnImplementationOf <MoBiPopulation>())
{
throw new PKSimException(PKSimConstants.Error.CannotExtractIndividualFrom(_executionContext.TypeFor(population)));
}
var allPopulationParameters = population.AllVectorialParameters(_entityPathResolver).ToList();
var allDistributedParameters = allPopulationParameters.Where(x => x.Formula.IsDistributed()).ToList();
var allConstantParameters = allPopulationParameters.Where(x => x.Formula.IsConstant()).ToList();
var allRemainingParameters = allPopulationParameters.Except(allConstantParameters).Except(allDistributedParameters);
//Update constant parameters first, then distributed and last all others. This ensures that formula parameters in the extracted individuals are not updated with a constant value
var allParametersOrderedByFormulaType = allConstantParameters.Union(allDistributedParameters).Union(allRemainingParameters).ToList();
var addCommands = individualExtractionOptions.IndividualIds.Distinct()
.Select(individualId => extractIndividualFrom(population, individualId, allParametersOrderedByFormulaType, individualExtractionOptions))
.ToList();
var overallCommand = new PKSimMacroCommand
{
CommandType = PKSimConstants.Command.CommandTypeAdd,
ObjectType = PKSimConstants.ObjectTypes.Population,
Description = PKSimConstants.Command.ExtractingIndividualsDescription(population.Name),
BuildingBlockName = population.Name,
BuildingBlockType = PKSimConstants.ObjectTypes.Population
};
overallCommand.AddRange(addCommands);
return(overallCommand);
}
private ICommand macroCommandFrom(Population population, ICommand baseCommand, IEnumerable <ICommand> commands)
{
var macroCommand = new PKSimMacroCommand
{
ObjectType = baseCommand.ObjectType,
Description = baseCommand.Description,
CommandType = baseCommand.CommandType
};
macroCommand.AddRange(commands);
_executionContext.UpdateBuildingBlockPropertiesInCommand(macroCommand, population);
return(macroCommand);
}
