public static int GetSinglePartialSum(Nucleotid parentNucleotid, Nucleotid childNucleotid)
{
int result = 1;
while (!childNucleotid.StartsWith(parentNucleotid.Sequence.Substring(result), Global.ErrorToleration) && result < parentNucleotid.Sequence.Length)
{
result++;
}
return(result);
}
public static Nucleotid Complimentary(Nucleotid nucleotid)
{
switch (nucleotid)
{
case Nucleotid.A:
return Nucleotid.T;
case Nucleotid.G:
return Nucleotid.C;
case Nucleotid.C:
return Nucleotid.G;
case Nucleotid.T:
return Nucleotid.A;
default:
throw new ArgumentOutOfRangeException("nucleotid");
}
}
private static void InitData(string fileName, int windowLength)
{
var nucleotids = File.ReadAllLines(fileName);
var nucleotidList = new List <Nucleotid>();
foreach (var item in nucleotids)
{
Nucleotid nucl = new Nucleotid()
{
Sequence = item
};
nucleotidList.Add(nucl);
}
Global.ErrorToleration = 0;
Global.MaxLength = windowLength;
Global.Nucleotids = nucleotidList;
}
public void SetUp()
{
nucleotid = new Nucleotid();
}
// A-0 G-1 C-2 T-3
public static char ToChar(Nucleotid nucleotid)
{
switch (nucleotid)
{
case Nucleotid.A:
return 'A';
case Nucleotid.G:
return 'G';
case Nucleotid.C:
return 'C';
case Nucleotid.T:
return 'T';
default:
throw new ArgumentOutOfRangeException("nucleotid");
}
}
