/// <summary>
/// Copy constructor.
/// </summary>
/// <param name="copyFrom">The settings object to copy.</param>
public NeatReproductionAsexualSettings(NeatReproductionAsexualSettings copyFrom)
{
this.ConnectionWeightMutationProbability = copyFrom.ConnectionWeightMutationProbability;
this.AddNodeMutationProbability = copyFrom.AddNodeMutationProbability;
this.AddConnectionMutationProbability = copyFrom.AddConnectionMutationProbability;
this.DeleteConnectionMutationProbability = copyFrom.DeleteConnectionMutationProbability;
}
private void SendSettingsToUI(NeatReproductionAsexualSettings settings)
{
SetValue(txtConnectionWeightMutationProbability, settings.ConnectionWeightMutationProbability);
SetValue(txtAddNodeMutationProbability, settings.AddNodeMutationProbability);
SetValue(txtAddConnectionMutationProbability, settings.AddConnectionMutationProbability);
SetValue(txtDeleteConnectionMutationProbability, settings.DeleteConnectionMutationProbability);
}
/// <summary>
/// Read json into a target instance of <see cref="NeatReproductionAsexualSettings"/>.
/// Settings that are present are read and set on the target settings object; all other settings
/// remain unchanged on the target object.
/// </summary>
/// <param name="target">The target settings object to store the read values on.</param>
/// <param name="jelem">The json element to read from.</param>
public static void Read(
NeatReproductionAsexualSettings target,
JsonElement jelem)
{
ReadDoubleOptional(jelem, "connectionWeightMutationProbability", x => target.ConnectionWeightMutationProbability = x);
ReadDoubleOptional(jelem, "addNodeMutationProbability", x => target.AddNodeMutationProbability = x);
ReadDoubleOptional(jelem, "addConnectionMutationProbability", x => target.AddConnectionMutationProbability = x);
ReadDoubleOptional(jelem, "deleteConnectionMutationProbability", x => target.DeleteConnectionMutationProbability = x);
target.Validate();
}
/// <summary>
/// Construct a new instance.
/// </summary>
/// <param name="eaSettings">NEAT evolution algorithm settings.</param>
/// <param name="evaluator">An evaluator of lists of genomes.</param>
/// <param name="speciationStrategy">Speciation strategy.</param>
/// <param name="population">An initial population of genomes.</param>
/// <param name="complexityRegulationStrategy">Complexity regulation strategy.</param>
/// <param name="reproductionAsexualSettings">Asexual reproduction settings.</param>
/// <param name="reproductionSexualSettings">Sexual reproduction settings.</param>
/// <param name="weightMutationScheme">Connection weight mutation scheme.</param>
/// <param name="rng">Random source.</param>
public NeatEvolutionAlgorithm(
NeatEvolutionAlgorithmSettings eaSettings,
IGenomeListEvaluator <NeatGenome <T> > evaluator,
ISpeciationStrategy <NeatGenome <T>, T> speciationStrategy,
NeatPopulation <T> population,
IComplexityRegulationStrategy complexityRegulationStrategy,
NeatReproductionAsexualSettings reproductionAsexualSettings,
NeatReproductionSexualSettings reproductionSexualSettings,
WeightMutationScheme <T> weightMutationScheme,
IRandomSource rng)
{
_eaSettingsCurrent = eaSettings ?? throw new ArgumentNullException(nameof(eaSettings));
_eaSettingsComplexifying = eaSettings;
_eaSettingsSimplifying = eaSettings.CreateSimplifyingSettings();
_evaluator = evaluator ?? throw new ArgumentNullException(nameof(evaluator));
_speciationStrategy = speciationStrategy ?? throw new ArgumentNullException(nameof(speciationStrategy));
_pop = population ?? throw new ArgumentNullException(nameof(population));
_complexityRegulationStrategy = complexityRegulationStrategy ?? throw new ArgumentNullException(nameof(complexityRegulationStrategy));
if (reproductionAsexualSettings == null)
{
throw new ArgumentNullException(nameof(reproductionAsexualSettings));
}
if (reproductionSexualSettings == null)
{
throw new ArgumentNullException(nameof(reproductionSexualSettings));
}
_rng = rng;
_genomeComparerDescending = new GenomeComparerDescending(evaluator.FitnessComparer);
if (eaSettings.SpeciesCount > population.PopulationSize)
{
throw new ArgumentException("Species count is higher then the population size.");
}
_generationSeq = new Int32Sequence();
_reproductionAsexual = new NeatReproductionAsexual <T>(
_pop.MetaNeatGenome, _pop.GenomeBuilder,
_pop.GenomeIdSeq, population.InnovationIdSeq, _generationSeq,
_pop.AddedNodeBuffer, reproductionAsexualSettings, weightMutationScheme);
_reproductionSexual = new NeatReproductionSexual <T>(
_pop.MetaNeatGenome, _pop.GenomeBuilder,
_pop.GenomeIdSeq, _generationSeq,
reproductionSexualSettings);
_offspringBuilder = new OffspringBuilder <T>(
_reproductionAsexual,
_reproductionSexual,
eaSettings.InterspeciesMatingProportion,
evaluator.FitnessComparer);
}
/// <summary>
/// Create a new instance of <see cref="DiscreteDistribution"/> that represents a subset of the possible
/// genome mutation types, and their relative probabilities. The subset consists of mutation types that
/// are non-destructive (i.e. weight mutation, add node mutation, add connection mutation).
/// </summary>
/// <param name="settings">Asexual reproduction settings.</param>
/// <returns>A new instance of <see cref="DiscreteDistribution"/>.</returns>
private static DiscreteDistribution CreateMutationTypeDiscreteDistribution_NonDestructive(
NeatReproductionAsexualSettings settings)
{
double[] probabilities = new double[]
{
settings.ConnectionWeightMutationProbability,
settings.AddNodeMutationProbability,
settings.AddConnectionMutationProbability
};
return(new DiscreteDistribution(probabilities));
}
/// <summary>
/// Construct a new instance.
/// </summary>
/// <param name="eaSettings">NEAT evolution algorithm settings.</param>
/// <param name="evaluator">An evaluator of lists of genomes.</param>
/// <param name="speciationStrategy">Speciation strategy.</param>
/// <param name="population">An initial population of genomes.</param>
/// <param name="reproductionAsexualSettings">Asexual reproduction settings.</param>
/// <param name="reproductionSexualSettings">Sexual reproduction settings.</param>
/// <param name="weightMutationScheme">Connection weight mutation scheme.</param>
public NeatEvolutionAlgorithm(
NeatEvolutionAlgorithmSettings eaSettings,
IGenomeListEvaluator <NeatGenome <T> > evaluator,
ISpeciationStrategy <NeatGenome <T>, T> speciationStrategy,
NeatPopulation <T> population,
NeatReproductionAsexualSettings reproductionAsexualSettings,
NeatReproductionSexualSettings reproductionSexualSettings,
WeightMutationScheme <T> weightMutationScheme)
: this(eaSettings, evaluator, speciationStrategy, population,
reproductionAsexualSettings, reproductionSexualSettings,
weightMutationScheme,
RandomDefaults.CreateRandomSource())
{
}
private void GetSettingsFromUI(NeatReproductionAsexualSettings settings)
{
double connectionWeightMutationProbability = GetValue(txtConnectionWeightMutationProbability, settings.ConnectionWeightMutationProbability);
double addNodeMutationProbability = GetValue(txtAddNodeMutationProbability, settings.AddNodeMutationProbability);
double addConnectionMutationProbability = GetValue(txtAddConnectionMutationProbability, settings.AddConnectionMutationProbability);
double deleteConnectionMutationProbability = GetValue(txtDeleteConnectionMutationProbability, settings.DeleteConnectionMutationProbability);
Normalize(
ref connectionWeightMutationProbability, ref addNodeMutationProbability,
ref addConnectionMutationProbability, ref deleteConnectionMutationProbability);
settings.ConnectionWeightMutationProbability = connectionWeightMutationProbability;
settings.AddNodeMutationProbability = addNodeMutationProbability;
settings.AddConnectionMutationProbability = addConnectionMutationProbability;
settings.DeleteConnectionMutationProbability = deleteConnectionMutationProbability;
}
/// <summary>
/// Creates a new settings object based on the current settings object, but modified to be suitable for use when
/// the evolution algorithm is in simplifying mode.
/// </summary>
/// <returns>A new instance of <see cref="NeatReproductionAsexualSettings"/>.</returns>
public NeatReproductionAsexualSettings CreateSimplifyingSettings()
{
// Invoke the copy constructor with the current object.
//
// Note. Currently all of the settings are modified, therefore it's not necessary to use the copy constructor
// however, if additional settings are added to the settings class then they will be handled automatically here
// without having to update this code, so this is a slightly safer approach.
var settings = new NeatReproductionAsexualSettings(this)
{
ConnectionWeightMutationProbability = 0.6,
AddNodeMutationProbability = 0.0,
AddConnectionMutationProbability = 0.0,
DeleteConnectionMutationProbability = 0.4
};
return(settings);
}
public void Read()
{
JsonDocument jdoc = JsonDocument.Parse(
@"{
""connectionWeightMutationProbability"":0.11,
""addNodeMutationProbability"":0.22,
""addConnectionMutationProbability"":0.33,
""deleteConnectionMutationProbability"":0.34
}");
// Init a default settings object.
var settings = new NeatReproductionAsexualSettings();
// Read json properties into the settings object.
NeatReproductionAsexualSettingsJsonReader.Read(settings, jdoc.RootElement);
// Assert the expected values.
Assert.Equal(0.11, settings.ConnectionWeightMutationProbability);
Assert.Equal(0.22, settings.AddNodeMutationProbability);
Assert.Equal(0.33, settings.AddConnectionMutationProbability);
Assert.Equal(0.34, settings.DeleteConnectionMutationProbability);
}
public void Read()
{
JObject jobj = JObject.Parse(
@"{
'connectionWeightMutationProbability':0.11,
'addNodeMutationProbability':0.22,
'addConnectionMutationProbability':0.33,
'deleteConnectionMutationProbability':0.44,
}");
// Init a default settings object.
var settings = new NeatReproductionAsexualSettings();
// Read json properties into the settings object.
NeatReproductionAsexualSettingsJsonReader.Read(settings, jobj);
// Assert the expected values.
Assert.AreEqual(0.11, settings.ConnectionWeightMutationProbability);
Assert.AreEqual(0.22, settings.AddNodeMutationProbability);
Assert.AreEqual(0.33, settings.AddConnectionMutationProbability);
Assert.AreEqual(0.44, settings.DeleteConnectionMutationProbability);
}
/// <summary>
/// Construct a new instance.
/// </summary>
/// <param name="metaNeatGenome">NeatGenome metadata.</param>
/// <param name="genomeBuilder">NeatGenome builder.</param>
/// <param name="genomeIdSeq">Genome ID sequence; for obtaining new genome IDs.</param>
/// <param name="innovationIdSeq">Innovation ID sequence; for obtaining new innovation IDs.</param>
/// <param name="generationSeq">Generation sequence; for obtaining the current generation number.</param>
/// <param name="addedNodeBuffer">A history buffer of added nodes.</param>
/// <param name="settings">Asexual reproduction settings.</param>
/// <param name="weightMutationScheme">Connection weight mutation scheme.</param>
public NeatReproductionAsexual(
MetaNeatGenome <T> metaNeatGenome,
INeatGenomeBuilder <T> genomeBuilder,
Int32Sequence genomeIdSeq,
Int32Sequence innovationIdSeq,
Int32Sequence generationSeq,
AddedNodeBuffer addedNodeBuffer,
NeatReproductionAsexualSettings settings,
WeightMutationScheme <T> weightMutationScheme)
{
var settingsComplexifying = settings;
var settingsSimplifying = settings.CreateSimplifyingSettings();
_mutationTypeDistributionsComplexifying = new MutationTypeDistributions(settingsComplexifying);
_mutationTypeDistributionsSimplifying = new MutationTypeDistributions(settingsSimplifying);
_mutationTypeDistributionsCurrent = _mutationTypeDistributionsComplexifying;
// Instantiate reproduction strategies.
_mutateWeightsStrategy = new MutateWeightsStrategy <T>(genomeBuilder, genomeIdSeq, generationSeq, weightMutationScheme);
_deleteConnectionStrategy = new DeleteConnectionStrategy <T>(genomeBuilder, genomeIdSeq, generationSeq);
// Add connection mutation; select acyclic/cyclic strategy as appropriate.
if (metaNeatGenome.IsAcyclic)
{
_addConnectionStrategy = new AddAcyclicConnectionStrategy <T>(
metaNeatGenome, genomeBuilder,
genomeIdSeq, generationSeq);
}
else
{
_addConnectionStrategy = new AddCyclicConnectionStrategy <T>(
metaNeatGenome, genomeBuilder,
genomeIdSeq, generationSeq);
}
_addNodeStrategy = new AddNodeStrategy <T>(metaNeatGenome, genomeBuilder, genomeIdSeq, innovationIdSeq, generationSeq, addedNodeBuffer);
}
public NeatEvolutionAlgorithm <double> CreateNeatEvolutionAlgorithm()
{
// Create a genome evaluator.
var genomeListEvaluator = CreateGenomeListEvaluator(out int inputCount, out int outputCount);
// Create an initial population.
_metaNeatGenome = CreateMetaNeatGenome(inputCount, outputCount);
_eaSettings = new NeatEvolutionAlgorithmSettings();
_eaSettings.SpeciesCount = 40;
_neatPop = CreatePopulation(_metaNeatGenome, 600);
// Create a speciation strategy instance.
var distanceMetric = new ManhattanDistanceMetric(1.0, 0.0, 10.0);
var speciationStrategy = new SharpNeat.Neat.Speciation.GeneticKMeans.Parallelized.GeneticKMeansSpeciationStrategy <double>(distanceMetric, 5);
// Create an asexual reproduction settings object (default settings).
var reproductionAsexualSettings = new NeatReproductionAsexualSettings();
// Create a sexual reproduction settings object (default settings).
var reproductionSexualSettings = new NeatReproductionSexualSettings();
// Create a connection weight mutation scheme.
var weightMutationScheme = WeightMutationSchemeFactory.CreateDefaultScheme(_metaNeatGenome.ConnectionWeightScale);
// Pull all of the parts together into an evolution algorithm instance.
var ea = new NeatEvolutionAlgorithm <double>(
_eaSettings,
genomeListEvaluator,
speciationStrategy,
_neatPop,
reproductionAsexualSettings,
reproductionSexualSettings,
weightMutationScheme);
return(ea);
}
/// <summary>
/// Construct a new instance.
/// </summary>
/// <param name="settings">Asexual reproduction settings.</param>
public MutationTypeDistributions(NeatReproductionAsexualSettings settings)
{
this.MutationTypeDistribution = CreateMutationTypeDiscreteDistribution(settings);
this.MutationTypeDistributionNonDestructive = CreateMutationTypeDiscreteDistribution_NonDestructive(settings);
}
