public void Speedtest1()
{
//string testfile =
// @"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzXML";
var testfile2 =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mz5";
//string testfile3 =
//@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzML";
Run run = new MzRun(testfile2);
var stopwatch = new Stopwatch();
var startScan = 5500;
var stopScan = 6500;
var scanSet = new ScanSet(startScan);
var times = new List <long>();
run.GetMSLevel(startScan);
for (var i = startScan; i < stopScan; i++)
{
scanSet = new ScanSet(i);
if (run.GetMSLevel(i) == 2)
{
continue;
}
stopwatch.Start();
run.GetMassSpectrum(scanSet);
stopwatch.Stop();
times.Add(stopwatch.ElapsedMilliseconds);
stopwatch.Reset();
}
//foreach (var time in times)
//{
// Console.WriteLine(time);
//}
Console.WriteLine("Average = " + times.Average());
}
public void GetMassSpectrum_higherThanTotalScans()
{
var testscan = 18506;
var testfile =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzXML";
Run run = new MzRun(testfile);
var scanSet = new ScanSet(testscan);
run.GetMassSpectrum(scanSet);
}
public void GetScanInfoTest1()
{
var testfile =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mz5";
Run run = new MzRun(testfile);
var ms2scan = 6005;
var info = run.GetScanInfo(ms2scan);
Console.WriteLine(info);
}
public void constructorTest1()
{
var testfile =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzXML";
Run run = new MzRun(testfile);
Assert.AreEqual(Backend.Globals.MSFileType.MZXML_Rawdata, run.MSFileType);
Assert.AreEqual(18505, run.GetNumMSScans());
Assert.AreEqual(0, run.MinLCScan);
Assert.AreEqual(18504, run.MaxLCScan);
Assert.AreEqual("QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18", run.DatasetName);
Assert.AreEqual(@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML", run.DataSetPath);
}
public void GetMassSpectrumTest1()
{
var testscan = 6004;
var testfile =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzXML";
Run run = new MzRun(testfile);
var scanSet = new ScanSet(testscan);
run.GetMassSpectrum(scanSet);
Assert.AreEqual(481.274514196002, (decimal)run.XYData.Xvalues[3769]);
Assert.AreEqual(13084442, run.XYData.Yvalues[3769]);
//TestUtilities.DisplayXYValues(run.XYData);
}
public void GetMSLevelsTest1()
{
var testscan = 6004;
var testscan2 = 6005;
var testfile =
@"\\protoapps\UserData\Slysz\DeconTools_TestFiles\mzXML\QC_Shew_08_04-pt5-2_11Jan09_Sphinx_08-11-18.mzXML";
Run run = new MzRun(testfile);
var level = run.GetMSLevel(testscan);
var scanTime = run.GetTime(testscan);
Assert.AreEqual(1, run.GetMSLevel(testscan));
Assert.AreEqual(2, run.GetMSLevel(testscan2));
Assert.AreEqual(1961.65, (decimal)run.GetTime(testscan));
}