/// <summary>
/// Return a number to use as the peak boundary based on the peptide sequence, replicate name, and
/// sample name. This number is then used to verify that the peak boundaries were applied correctly.
/// </summary>
public double GetPeakStartTime(PeptideDocNode peptide, ChromatogramSet chromatogramSet, MsDataFileUri msDataFileUri)
{
double time = peptide.Peptide.Sequence.Length;
var replicateTimes = new Dictionary <string, double>()
{
{ "ReplicateOne", 1 }, { "ReplicateTwo", 0 }, { "ReplicateThree", 2 }
};
time += replicateTimes[chromatogramSet.Name];
var sampleTimes = new Dictionary <string, double>()
{
{ "blank", 0 }, { "rfp9_after_h_1", -.25 }, { "test", .3 }, { "rfp9_before_h_1", .4 }
};
time += sampleTimes[msDataFileUri.GetSampleName()];
return(time);
}
