/// <summary>
/// Parse a file line into a molecule type data object, with a list of binding sites
/// </summary>
/// <param name="line"> The file line to parse for data</param>
/// <returns> The data constructed by parsing the file line</returns>
private MoleculeFileData ParseMolecule(string line)
{
if (!line.Contains("(") || !line.Contains(")"))
{
Debug.LogError(String.Format("{0} a molecule is missing parentheses or binding site information.\n{1}", fileErrorMsg, line));
return(new MoleculeFileData());
}
MoleculeFileData m = new MoleculeFileData();
int lp = line.IndexOf("(");
int rp = line.IndexOf(")");
m.name = line.Substring(0, lp).Trim();
// remove the name & the "(" and ")" characters
line = line.Substring(lp + 1, rp - lp - 1);
// split the binding site info by the "," character
string[] binding_site_strings = line.Split(
new[] { "," },
StringSplitOptions.RemoveEmptyEntries);
// parse the info for each binding site
for (int i = 0; i < binding_site_strings.Length; ++i)
{
m.bindingSites.Add(ParseBindingSite(binding_site_strings[i]));
}
return(m);
}
/// <summary>
/// Parses a list of file-lines, line by line, for molecule type data
/// Generally, expected to be called second in file parsing
/// Molecule types describe the allowed states of molecule binding-sites in the simulation
/// </summary>
/// <param name="info"> The strings (file lines) to parse for data</param>
/// <param name="fdata"> The BNGL File data object that holds parsed data</param>
/// <returns>0(int) for successfull completion</returns>
private int ParseMoleculeTypes(List <string> info, BNGLFileData fdata)
{
// parse each molecule line-by-line
foreach (string s in info)
{
for (int i = 0; i < info.Count; ++i)
{
string line = info[i];
MoleculeFileData md = ParseMolecule(line);
fdata.molecules.Add(md);
}
}
return(0);
}
