protected override void Context()
{
base.Context();
_project = new MoBiProject();
var molecule = new MoleculeBuilder().WithName(_moleculeName);
var moleculeParameter = new Parameter().WithName(_moleculeParameterName);
molecule.Add(moleculeParameter);
var molecules = new MoleculeBuildingBlock()
{
molecule
};
_project.AddBuildingBlock(molecules);
var parameter = new Parameter().WithName(_parameterName);
var root = new Container().WithName("Root");
root.Add(parameter);
var spatialStructure = new MoBiSpatialStructure().WithTopContainer(root);
_project.AddBuildingBlock(spatialStructure);
var reactionBuilder = new ReactionBuilder().WithName(_reactionName);
var reactions = new MoBiReactionBuildingBlock()
{
reactionBuilder
};
_project.AddBuildingBlock(reactions);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
protected override void Context()
{
base.Context();
_moleculeParameter = new Parameter().WithName("RP");
var moleculeBuilder = new MoleculeBuilder();
moleculeBuilder.Add(_moleculeParameter);
}
protected override void Context()
{
base.Context();
_project = new MoBiProject();
var molecule = new MoleculeBuilder().WithName(_moleculeName);
var moleculeParameter = new Parameter().WithName(_moleculeParameterName);
molecule.Add(moleculeParameter);
var molecules = new MoleculeBuildingBlock()
{
molecule
};
_project.AddBuildingBlock(molecules);
var parameter = new Parameter().WithName(_parameterName);
var root = new Container().WithName(_topContainerName);
root.Add(parameter);
var spatialStructure = new MoBiSpatialStructure().WithTopContainer(root);
spatialStructure.GlobalMoleculeDependentProperties = new Container().WithName(Constants.MOLECULE_PROPERTIES);
spatialStructure.NeighborhoodsContainer = new Container().WithName(Constants.NEIGHBORHOODS);
_project.AddBuildingBlock(spatialStructure);
var reactionBuilder = new ReactionBuilder().WithName(_reactionName);
var reactions = new MoBiReactionBuildingBlock()
{
reactionBuilder
};
_project.AddBuildingBlock(reactions);
_project.AddSimulation(new MoBiSimulation().WithName(_simulationName));
var eventGroupBuilder = new EventGroupBuilder().WithName(_eventGroupName);
var eventGroupBuildingBlock = new EventGroupBuildingBlock();
eventGroupBuildingBlock.Add(eventGroupBuilder);
_project.AddBuildingBlock(eventGroupBuildingBlock);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
protected override void Context()
{
base.Context();
_passiveTransports2 = new PassiveTransportBuildingBlock();
_project.AddBuildingBlock(_passiveTransports);
_project.AddBuildingBlock(_passiveTransports2);
_project.AddBuildingBlock(_molecules);
var anotherMoleculeWithPassiveTransport = new MoleculeBuilder().WithName("MOLECULE");
var molecules2 = new MoleculeBuildingBlock {
anotherMoleculeWithPassiveTransport
}.WithName("MBB2");
var samePassiveTransport = new TransportBuilder().WithName("PASSIVE TRANSPORT").WithFormula(A.Fake <IFormula>());
anotherMoleculeWithPassiveTransport.Add(samePassiveTransport);
A.CallTo(() => _formulaTask.FormulasAreTheSame(_passiveTransportKinetic, samePassiveTransport.Formula)).Returns(true);
A.CallTo(() => _cloneManagerForModel.Clone <ITransportBuilder>(_passiveTransport)).ReturnsLazily(x => new TransportBuilder().WithFormula(_passiveTransportKinetic));
A.CallTo(() => _containerTask.CreateUniqueName(_passiveTransports, A <string> ._, true)).ReturnsLazily(x => x.Arguments[1].ConvertedTo <string>());
_project.AddBuildingBlock(molecules2);
}
