private void ShowHelp(TextWriter writer, ModeParser specifiedMode = null)
{
writer.WriteLine($"Canvas {GetVersion()} {Illumina.Shared.Version.VersionInfo.AssemblyCopyright}");
writer.WriteLine();
string modeName = specifiedMode?.Name ?? "[MODE]";
if (specifiedMode != null)
{
writer.WriteLine($"{specifiedMode.Name} - {specifiedMode.Description}");
writer.WriteLine();
}
writer.WriteLine($"Usage: Canvas.exe {modeName} [OPTIONS]+");
writer.WriteLine();
if (specifiedMode == null)
{
writer.WriteLine("Available modes:");
foreach (var mode in _modeParsers.Values)
{
writer.WriteLine($"\t{mode.Name} - {mode.Description}");
}
writer.WriteLine();
}
writer.WriteLine("Options:");
if (specifiedMode != null)
{
specifiedMode.ShowHelp(writer);
}
BaseOptionsParser.ShowHelp(writer);
}
private bool HandleBaseOptions(BaseOptions baseOptions, TextWriter writer, ModeParser specifiedMode = null)
{
if (baseOptions.ShowHelp)
{
ShowHelp(writer, specifiedMode);
return true;
}
if (baseOptions.ShowVersion)
{
ShowVersion(writer);
return true;
}
return false;
}
public override void OnImportAsset(AssetImportContext ctx)
{
var lines = File.ReadAllLines(ctx.assetPath);
int modeCoordinates = 0;
int maxModeCoordinates = 0;
var coordParser = new CoordinateParser();
var modeParser = new ModeParser();
MoleculeDefinition molecule = new MoleculeDefinition();
foreach (var line in lines)
{
coordParser.ParseLine(molecule, line);
modeParser.ParseLine(molecule, line);
if (molecule.VibrationalModes.Count > 0)
{
var regexBond = " ! R\\d+ +R\\((\\d+),(\\d+)\\)";
var match = Regex.Match(line, regexBond);
if (match.Success)
{
var atom1 = int.Parse(match.Groups [1].Value) - 1;
var atom2 = int.Parse(match.Groups [2].Value) - 1;
molecule.Bonds.Add(new BondDefinition()
{
AtomIndex1 = atom1, AtomIndex2 = atom2
});
}
}
}
ctx.AddObjectToAsset("Data", molecule);
ctx.SetMainObject(molecule);
}
