public void Build()
{
foreach (var methodTranList in MethodTrans)
{
Console.Error.WriteLine("MESSAGE: Exporting method {0}", Path.GetFileName(methodTranList.FinalMethod));
if (string.IsNullOrEmpty(methodTranList.TransitionList))
{
throw new IOException(string.Format("Failure creating method file {0}. The mass list is empty.", methodTranList.FinalMethod));
}
string outMeth = EnsureExtension(methodTranList.OutputMethod, ".meth"); // Thermo needs the extension to be .meth
if (!Equals(outMeth, methodTranList.OutputMethod) && File.Exists(methodTranList.OutputMethod))
{
File.Move(methodTranList.OutputMethod, outMeth);
}
try
{
using (IMethodXMLContext mxc = MethodXMLFactory.CreateContext(InstrumentType, InstrumentVersion))
using (IMethodXML mx = mxc.Create())
{
mx.Open(TemplateMethod);
mx.EnableValidation(true);
ListItem[] listItems = ParseList(methodTranList.TransitionList).ToArray();
if (!listItems.Any())
{
throw new IOException("Empty mass list found.");
}
if (InstrumentType.Equals(InstrumentFusion))
{
mx.ApplyMethodModificationsFromXML(GetFusionModificationXml(listItems, outMeth));
}
else
{
mx.ImportMassListFromXML(GetTsqMassListXml(listItems, outMeth));
}
mx.SaveAs(outMeth);
}
if (!File.Exists(outMeth))
{
throw new IOException(string.Format("Failure creating method file {0}.", methodTranList.FinalMethod));
}
}
finally
{
if (!Equals(outMeth, methodTranList.OutputMethod))
{
File.Move(outMeth, methodTranList.OutputMethod);
}
}
}
}
/// <summary>
/// Helper function to get the MethodXMLContext
/// </summary>
/// <param name="model">The instrument model</param>
/// <param name="version">The instrument version</param>
/// <returns></returns>
public static IMethodXMLContext CreateContext(string model = "", string version = "")
{
if (string.IsNullOrEmpty(model))
{
model = MethodXMLFactory.GetInstalledServerModel();
}
if (string.IsNullOrEmpty(version))
{
version = MethodXMLFactory.GetLatestInstalledVersion(model);
}
if (!MethodXMLFactory.GetInstalledInstrumentModels().Contains(model))
{
throw new ArgumentException("Cannot create method context for non-installed instrument model: " + model);
}
return(MethodXMLFactory.CreateContext(model, version));
}
