// loads cells from the given file
public void loadCellsFromFile(string path)
{
// clear all of the previous cells so the new ones can be loaded
if (cells != null)
{
foreach (GameObject cell in cells)
{
Destroy(cell);
}
}
var xmlParser = new XmlParser();
var matParser = new MatParser();
try{
// string path = EditorUtility.OpenFilePanel("Select XML or MAT File", "", "");
string physicellCellsPath;
if (!path.Contains(".xml") && !path.Contains(".XML"))
{
if (path.Contains(".mat") || path.Contains(".MAT"))
{
physicellCellsPath = path;
// just used the default variables
variableNames = new string[32] {
"ID", "position", "position", "position", "total_volume",
"cell_type", "cycle_model", "current_phase", "elapsed_time_in_phase",
"nuclear_volume", "cytopasmic_volume", "fluid_fraction", "calcified_fraction",
"orientation", "orientation", "orientation", "polarity", "migration_speed",
"motility_vector", "motility_vector", "motility_vector", "migration_bias",
"motility_bias_direction", "motility_bias_direction", "motility_bias_direction",
"persistence_time", "motility_reserved", "oncoprotein", "elastic_coefficient",
"kill_rate", "attachment_lifetime", "attachment_rate"
};
}
else
{
throw new System.Exception("wrong file type, wanted XML or MAT");
}
}
else
{
xmlParser.parseXML(path);
// use the MAT file referenced in the XML file
physicellCellsPath = xmlParser.getPhysicellCellsPath();
// use the variables specified by the XML file
variableNames = xmlParser.getVariableNames();
}
// parser.GetComponent<MatParser>().parseMat("Assets/Parsing Test Data/output00003696_cells_physicell.mat");
// invoke the parse function in our MatParser
matParser.parseMat(physicellCellsPath);
// once the pare function has been invoked, we can access that matData
float[,] data = matParser.getData();
cells = new GameObject[greatestID(data) + 1];
Vector3 origin = OriginObj.transform.position;
// initialize all of the modification zones
foreach (GameObject modZone in modificationZones)
{
modZone.GetComponent <Modifier>().init();
}
float[] cellDataCol;
int numCells = data.GetLength(1);
for (int i = 0; i < numCells; i++)
{
// get the current col of data
cellDataCol = getDataColumn(data, i);
// initialize each cell and place it in the scene and in cell array
try{
Vector3 pos = new Vector3(cellDataCol[1] + origin.x, cellDataCol[2] + origin.y, cellDataCol[3] + origin.z);
// occasionally, cells are given an infinite for one of their coordinates, so we just ignore those cases
if (pos.x > 100000 || pos.y > 100000 || pos.z > 100000)
{
continue;
}
// create the cell
GameObject g = Instantiate(cellPrefab, pos, Quaternion.identity);
float radius = (float)(Math.Pow(cellDataCol[4] / ((4f / 3f) * Math.PI), 1f / 3f));
g.transform.localScale = new Vector3(radius, radius, radius);
// place the cell in our cells array
cells[(int)cellDataCol[0]] = g;
// give the cell a random color (just for fun)
// g.GetComponent<Renderer>().material.SetColor("_Color", new Color(UnityEngine.Random.Range(0f, 1f), UnityEngine.Random.Range(0f, 1f), UnityEngine.Random.Range(0f, 1f)));
// place the cell in the correct position in the scene and give it the appropriate variable names
g.GetComponent <CellData>().init(pos, variableNames);
// instantiate CellData variable dictionary
int variableIndex = 0;
foreach (string variableName in variableNames)
{
g.GetComponent <CellData>().addDataPoint(variableName, cellDataCol[variableIndex]);
variableIndex++;
}
// apply all modification zones
foreach (GameObject modZone in modificationZones)
{
// if the cell is inside of modZone, apply modZone's modify function to it
if (modZone.GetComponent <Collider>().bounds.Contains(g.GetComponent <CellData>().getRealPosition()))
{
modZone.GetComponent <Modifier>().modify(g);
}
}
}
catch (Exception e) {
Debug.Log("Exception " + e + " at cell id: " + cellDataCol[0]);
}
}
}
catch (Exception fe) {
Debug.Log(fe);
}
}
public static ArrayList parse(string fileName, ref ArrayList fileContent)
{
ArrayList textureTricks = new ArrayList();
TextureTrick tt;
ArrayList textureTrickData = null;
int textureTrickStartIndex = -1, textureTrickEndIndex = -1;
string textureTrickName = "";
bool isTextureTrick = false;
bool createTextureTrick = false;
int endCount = 0;
int maxEndCount = 0;
int i = 0;
foreach (object obj in fileContent)
{
System.Windows.Forms.Application.DoEvents();
string line = (string)obj;
line = common.COH_IO.removeExtraSpaceBetweenWords(((string)obj).Replace("\t", " ")).Trim();
if (line.ToLower().StartsWith("Texture ".ToLower()) && !MatParser.isMatTrick(fileContent, i))
//!line.ToLower().StartsWith("Texture X_".ToLower()))
{
textureTrickName = line.Replace("//", "#").Replace("Texture ", "").Replace("texture ", "").Split('#')[0].Replace(".tga", "").Replace(".TGA", "").Replace(".Txt", "").Replace(".txt", "");
textureTrickStartIndex = i;
isTextureTrick = true;
createTextureTrick = false;
textureTrickData = new ArrayList();
}
if (isTextureTrick)
{
string dataObj = (string)obj;
if (dataObj.ToLower().Contains("Texture_Name".ToLower()))
{
dataObj = common.COH_IO.fixInnerCamelCase((string)obj, "Texture_Name").Replace("Texture_Name.tga", "none").Replace("Texture_Name", "none");
}
textureTrickData.Add(dataObj);
if (line.ToLower().StartsWith("End".ToLower()))
{
endCount++;
}
if (endCount > maxEndCount || i == (fileContent.Count - 1))
{
isTextureTrick = false;
textureTrickEndIndex = i;
createTextureTrick = true;
}
if (createTextureTrick)
{
tt = new TextureTrick(textureTrickStartIndex,
textureTrickEndIndex, textureTrickData, fileName, textureTrickName);
textureTricks.Add(tt);
endCount = 0;
maxEndCount = 0;
}
}
i++;
}
return(textureTricks);
}
public matBlockForm(string file_name, ref RichTextBox rtBx, ref ArrayList file_content, System.Collections.Generic.Dictionary <string, string> tga_files_dictionary)
{
finishedLoading = true;
common.WatingIconAnim wia = new COH_CostumeUpdater.common.WatingIconAnim();
wia.Show();
Application.DoEvents();
this.Cursor = Cursors.WaitCursor;
selectdMatBtn = null;
rTextBox = rtBx;
bumpMap2Indx = -1;
updateMatListComboBx = true;
fileName = file_name;
System.Windows.Forms.Application.DoEvents();
InitializeComponent();
System.Windows.Forms.Application.DoEvents();
matListCmboBx.Items.Clear();
fileContent = (ArrayList)file_content.Clone();
tgaFilesDictionary = tga_files_dictionary;
if (matTricksList != null)
{
matTricksList.Clear();
}
System.Windows.Forms.Application.DoEvents();
matTricksList = MatParser.parse(file_name, ref fileContent);
foreach (object obj in matTricksList)
{
System.Windows.Forms.Application.DoEvents();
MatTrick mt = (MatTrick)obj;
if (!mt.deleted)
{
buildMatBtn(mt.name, mt);
}
}
if (matListCmboBx.Items.Count > 0)
{
System.Windows.Forms.Application.DoEvents();
System.Windows.Forms.Application.DoEvents();
buildMatProperties();
matListCmboBx.SelectedItem = matListCmboBx.Items[0];
matListCmboBx_SelectionChangeCommitted(matListCmboBx, new EventArgs());
}
else
{
string fName = System.IO.Path.GetFileName(fileName);
string warning = string.Format("\"{0}\" is not a Material Trick File.\r\nIt dose not contain (Texture X_...End) block.\r\n", fName);
//MessageBox.Show(warning);
rTextBox.SelectionColor = Color.Red;
rTextBox.SelectedText += warning;
dupMatBtn.Enabled = false;
deleteMatBtn.Enabled = false;
renameMatBtn.Enabled = false;
}
System.Windows.Forms.Application.DoEvents();
wia.Close();
wia.Dispose();
this.Cursor = Cursors.Arrow;
}
