public override IEnumerable <string> Process(string filename)
{
string[] files = new string[splitCount];
MascotResultDtaselectFormat dtaSelectFormat = new MascotResultDtaselectFormat();
Progress.SetMessage("Reading document ...");
IIdentifiedResult mr = dtaSelectFormat.ReadFromFile(filename);
Progress.SetRange(0, splitCount);
for (int i = 0; i < splitCount; i++)
{
files[i] = FileUtils.ChangeExtension(filename, (i + 1).ToString() + new FileInfo(filename).Extension);
MascotResult curMr = new MascotResult();
for (int j = 0; j < mr.Count; j++)
{
if (j % splitCount == i)
{
curMr.Add(mr[j]);
}
}
Progress.SetMessage("Writing document " + files[i] + " ...");
dtaSelectFormat.WriteToFile(files[i], curMr);
Progress.SetPosition(i + 1);
}
Progress.End();
return(new List <string>(files));
}
public void TestGetAnnotationKeys()
{
string key1 = "TEST1";
string key2 = "TEST2";
var mph1 = new IdentifiedSpectrum();
mph1.Annotations.Add(key1, null);
mph1.Query.FileScan.Experimental = "EXP1";
new IdentifiedPeptide(mph1);
var mph2 = new IdentifiedSpectrum();
mph2.Annotations.Add(key2, null);
mph2.Query.FileScan.Experimental = "EXP2";
new IdentifiedPeptide(mph2);
mph1.Peptide.Sequence = "SEQ1";
mph2.Peptide.Sequence = "SEQ2";
var protein = new IdentifiedProtein();
protein.Peptides.Add(mph1.Peptide);
protein.Peptides.Add(mph2.Peptide);
var mpg = new IdentifiedProteinGroup();
mpg.Add(protein);
var mr = new MascotResult();
mr.Add(mpg);
List<string> annotationKeys = AnnotationUtils.GetAnnotationKeys(mr.GetSpectra());
Assert.AreEqual(2, annotationKeys.Count);
Assert.IsTrue(annotationKeys.Contains(key1));
Assert.IsTrue(annotationKeys.Contains(key2));
}
