protected virtual IList <ITransitionPeakData <TData> > GetIonTypes <TData>(IList <ITransitionGroupPeakData <TData> > tranGroupPeakDatas)
{
return(MQuestHelpers.GetDefaultIonTypes(tranGroupPeakDatas));
}
protected override IList <ITransitionGroupPeakData <TData> > GetTransitionGroups <TData>(
IPeptidePeakData <TData> summaryPeakData)
{
return(MQuestHelpers.GetStandardGroups(summaryPeakData));
}
protected override float Calculate(PeakScoringContext context, IPeptidePeakData <ISummaryPeakData> summaryPeakData)
{
return(MQuestHelpers.CalculateIdotp(context, summaryPeakData));
}
protected override IList <ITransitionPeakData <IDetailedPeakData> > FilterCrossIons(IList <ITransitionGroupPeakData <IDetailedPeakData> > tranGroupPeakDatas)
{
return(GetMaxAreaIon(MQuestHelpers.GetMs1IonTypes(tranGroupPeakDatas)));
}
protected override double MaximumValue(PeakScoringContext context)
{
return(MQuestHelpers.GetMaximumPrecursorMassError(context));
}
protected override IEnumerable <ITransitionGroupPeakData <TData> > GetTransitionGroups <TData>(
IPeptidePeakData <TData> summaryPeakData)
{
return(MQuestHelpers.GetAnalyteGroups(summaryPeakData));
}
protected override IList <ITransitionPeakData <TData> > GetIonTypes <TData>(ITransitionGroupPeakData <TData> tranPeakDatas)
{
return(MQuestHelpers.GetDefaultIonTypes(new [] { tranPeakDatas }));
}
protected override IList <ITransitionGroupPeakData <ISummaryPeakData> > GetIncludedGroups(IPeptidePeakData <ISummaryPeakData> summaryPeakData)
{
return(MQuestHelpers.GetBestAvailableGroups(summaryPeakData));
}
protected override IList <ITransitionPeakData <TData> > GetIonTypes <TData>(IList <ITransitionGroupPeakData <TData> > tranGroupPeakDatas)
{
return(MQuestHelpers.GetMs1IonTypes(tranGroupPeakDatas));
}
