private static LookupCollection RawFilesinFrame(binFrame frame, out int nRawfiles)
{
//Need the Rawfile names
LookupCollection rawFilesColl = new LookupCollection();
string rawFileName;
nRawfiles = 0;
for (int i = frame.scan.GetLowerBound(0); i <= frame.scan.GetUpperBound(0); i++)
{
if (frame.scan[i].rawFileName != null)
{
rawFileName = frame.scan[i].rawFileName.Trim();
if (!rawFilesColl.Contains(rawFileName))
{
int initScansNum = 1;
rawFilesColl.Add(rawFileName, initScansNum);
}
else
{
int oneMore = (int)rawFilesColl[rawFileName] + 1;
rawFilesColl[rawFileName] = oneMore;
}
}
}
nRawfiles = rawFilesColl.Count;
return(rawFilesColl);
}
/* public static LookupCollection countRawFiles(string fileXml,out int nRawfiles)
* {
*
* //Initialize necessary objets for XML reading
* XmlTextReader reader = new XmlTextReader(fileXml);
* XmlNodeType nType = reader.NodeType;
* XmlDocument xmldoc = new XmlDocument();
* xmldoc.Load(reader);
*
* //Initialize the AminoacidList[] tAaList
* XmlNodeList xmlnodeMatch = xmldoc.GetElementsByTagName("peptide_match");
*
* //Need the Rawfile names
* LookupCollection rawFilesColl = new LookupCollection();
*
* string rawFileName;
* nRawfiles = 0;
* foreach (XmlNode node in xmlnodeMatch)
* {
* foreach (XmlNode chNode in node.ChildNodes)
* {
* if (chNode.Name == "RAWFileName")
* {
* rawFileName = chNode.InnerText.ToString().Trim();
*
* if (!rawFilesColl.Contains(rawFileName))
* {
* int initScansNum = 1;
* rawFilesColl.Add(rawFileName, initScansNum);
* }
* else
* {
* int oneMore = (int)rawFilesColl[rawFileName] + 1;
* rawFilesColl[rawFileName] = oneMore;
* }
*
* }
* }
* }
* nRawfiles = rawFilesColl.Count;
*
* return rawFilesColl;
*
* }
*/
public static LookupCollection countRawFiles(DataView _quiXMLv, out int nRawfiles)
{
//Need the Rawfile names
LookupCollection rawFilesColl = new LookupCollection();
string rawFileName;
nRawfiles = 0;
for (int i = 0; i < _quiXMLv.Count; i++)
{
rawFileName = _quiXMLv[i]["RAWFileName"].ToString().Trim();
if (!rawFilesColl.Contains(rawFileName))
{
int initScansNum = 1;
rawFilesColl.Add(rawFileName, initScansNum);
}
else
{
int oneMore = (int)rawFilesColl[rawFileName] + 1;
rawFilesColl[rawFileName] = oneMore;
}
}
nRawfiles = rawFilesColl.Count;
return(rawFilesColl);
}
public static LookupCollection countRawFiles(string fileXml, out int nRawfiles)
{
//Initialize necessary objets for XML reading
XmlTextReader reader = new XmlTextReader(fileXml);
XmlNodeType nType = reader.NodeType;
XmlDocument xmldoc = new XmlDocument();
xmldoc.Load(reader);
//Initialize the AminoacidList[] tAaList
XmlNodeList xmlnodeMatch = xmldoc.GetElementsByTagName("peptide_match");
//Need the Rawfile names
LookupCollection rawFilesColl = new LookupCollection();
string rawFileName;
nRawfiles = 0;
foreach (XmlNode node in xmlnodeMatch)
{
foreach (XmlNode chNode in node.ChildNodes)
{
if (chNode.Name == "RAWFileName")
{
rawFileName = chNode.InnerText.ToString().Trim();
if (!rawFilesColl.Contains(rawFileName))
{
int initScansNum = 1;
rawFilesColl.Add(rawFileName, initScansNum);
}
else
{
int oneMore = (int)rawFilesColl[rawFileName] + 1;
rawFilesColl[rawFileName] = oneMore;
}
}
}
}
nRawfiles = rawFilesColl.Count;
return(rawFilesColl);
}
