public void InvalidateGetObjectData()
{
// Get Values from XML node.
string location = _utilityObj._xmlUtil.GetTextValue(
Constants.LocationWithDotOperatorNode,
Constants.Location);
StreamingContext context = new
StreamingContext(StreamingContextStates.All);
// Build a location.
ILocationBuilder locBuilder = new LocationBuilder();
ILocation loc = locBuilder.GetLocation(location);
try
{
loc.GetObjectData(null, context);
Assert.Fail();
}
catch (ArgumentNullException)
{
Console.WriteLine(
"GenBankFeatures P1 : Validated the expected exception");
ApplicationLog.WriteLine(
"GenBankFeatures P1 : Validated the expected exception");
}
}
public void BuildWalls(Location location)
{
if (location.GetWalls() == null)
{
Debug.LogWarning("Location's wall is null");
return;
}
List <string> walls = new List <string>();
float maxx = 0;
float maxy = 0;
for (int i = 0; i < location.GetWalls().Count; i++)
{
//find the maximum x (aka the width)
if (location.GetWalls()[i].x > maxx)
{
maxx = location.GetWalls()[i].x;
}
//find the maximum y (aka the height)
if (location.GetWalls()[i].y > maxy)
{
maxy = location.GetWalls()[i].y;
}
string coordinate = location.GetWalls()[i].x + "," + location.GetWalls()[i].y;
walls.Add(coordinate);
}
width = maxx;
height = maxy;
FindObjectOfType <Navigation.Grid>().roomscale = new Vector2(width, height);
FindObjectOfType <Navigation.Grid>().GenerateCells();
LocationBuilder.BuildWalls(walls);
}
public void GenerateSingleLocationString(double latitude, double longitude)
{
var result = new LocationBuilder().Append(new GeoLocation(latitude, longitude))
.Build();
Assert.NotEmpty(result);
}
void OnDestroy()
{
if (instance == this)
{
instance = null;
}
}
public void ShouldMapLocationToLocationListItemModel()
{
var entity = new LocationBuilder().Build();
var model = new LocationToLocationListItemModelMapper().Build(entity);
model.Classroom.ShouldBe(entity.ClassroomIdentificationCode);
}
public void InValidateGenBankLocations()
{
// Build a location with invalid values
ILocationBuilder locBuilder = new LocationBuilder();
ILocation loc = null;
try
{
loc = locBuilder.GetLocation(null);
Assert.Fail();
}
catch (ArgumentNullException)
{
Assert.IsNull(loc);
ApplicationLog.WriteLine(
"GenBankFeatures P2 : Validated the expected exception");
}
try
{
loc = locBuilder.GetLocation("Invalid");
Assert.Fail();
}
catch (ArgumentException)
{
Assert.IsNull(loc);
ApplicationLog.WriteLine(
"GenBankFeatures P2 : Validated the expected exception");
}
}
public static void BuildWalls(List <Vector2> walls)
{
instance = INSTANCE;
DestroyWalls();
GameObject next_wall;
Vector3 nextPosition = new Vector3(walls[0].x, 0, walls[0].y);
for (int i = 0; i < walls.Count - 1; i++)
{
next_wall = Instantiate(p_wall, instance.transform.Find("Walls"));
next_wall.name = "Wall (" + i + ")";
next_wall.transform.position = nextPosition;
nextPosition.x = walls[i + 1].x;
nextPosition.z = walls[i + 1].y;
next_wall.transform.LookAt(nextPosition);
next_wall.transform.localScale = new Vector3(s_wallWidth, s_wallHeight, (nextPosition - next_wall.transform.position).magnitude + (s_wallWidth / 2));
}
next_wall = Instantiate(p_wall, instance.transform.Find("Walls"));
next_wall.name = "Wall (" + (walls.Count - 1) + ")";
next_wall.transform.position = nextPosition;
nextPosition.x = walls[0].x;
nextPosition.z = walls[0].y;
next_wall.transform.LookAt(nextPosition);
next_wall.transform.localScale = new Vector3(s_wallWidth, s_wallHeight, (nextPosition - next_wall.transform.position).magnitude + (s_wallWidth / 2));
}
void Awake()
{
if (instance != null)
{
DestroyImmediate(gameObject);
}
instance = this;
}
public void LocationBuilder_ShouldThrowException_When_AddressIsEmpty(string address)
{
Assert.Throws <ArgumentNullException>(() =>
{
var result = new LocationBuilder().Append(address)
.Build();
});
}
public void InValidateGenBankLocationPositions()
{
// Get Values from XML node.
string location = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithEndDataUsingOperatorNode, Constants.Location);
string expectedEndData = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithEndDataUsingOperatorNode, Constants.EndData);
string expectedStartData = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithEndDataUsingOperatorNode, Constants.StartData);
string position = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithEndDataUsingOperatorNode, Constants.Position);
// Build a location.
ILocationBuilder locBuilder = new LocationBuilder();
Location loc = (Location)locBuilder.GetLocation(location);
loc.Resolver = null;
loc.EndData = expectedEndData;
loc.StartData = expectedStartData;
// Validate whether mentioned end data is present in the location
// or not.
try
{
loc.IsInEnd(Int32.Parse(position, (IFormatProvider)null));
Assert.Fail();
}
catch (InvalidOperationException)
{
// Log to VSTest GUI.
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Expected exception is verified"));
}
try
{
loc.IsInStart(Int32.Parse(position, (IFormatProvider)null));
Assert.Fail();
}
catch (InvalidOperationException)
{
// Log to VSTest GUI.
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Expected exception is verified"));
}
try
{
loc.IsInRange(Int32.Parse(position, (IFormatProvider)null));
Assert.Fail();
}
catch (InvalidOperationException)
{
// Log to VSTest GUI.
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Expected exception is verified"));
}
}
public FakeItemsRepository()
{
Items = new List <Item>();
for (int i = 0; i < 30; i++)
{
var location = LocationBuilder.TypicalWId().Build();
var item = ItemBuilder.TypicalWId().WithLocation(location).Build();
Items.Add(item);
}
}
static void DestroyWalls()
{
instance = INSTANCE;
Transform walls = instance.transform.Find("Walls");
for (int i = walls.childCount - 1; i >= 0; i--)
{
Destroy(walls.GetChild(i).gameObject);
}
}
static void DestroyBeacons()
{
instance = INSTANCE;
Transform beacons = instance.transform.Find("Beacons");
for (int i = beacons.childCount - 1; i >= 0; i--)
{
Destroy(beacons.GetChild(i).gameObject);
}
}
public static Location ValidateLocation(dynamic data)
{
Location location = LocationBuilder.Init()
.WithName(JsonConvert.SerializeObject(data.name))
.OfType(JsonConvert.SerializeObject(data.type))
.FromDimension(JsonConvert.SerializeObject(data.dimension))
.WithThatManyResidents((ushort)data.residents.Length)
.Build();
return(location);
}
public void ShouldHaveErrorsWhenLocationExists()
{
Setup();
var locationEntity = new LocationBuilder().Build();
_genericRepository
.Get(Arg.Any <Expression <Func <Web.Data.Entities.Location, bool> > >())
.Returns(locationEntity);
_validator.ShouldHaveValidationErrorFor(m => m.ClassroomIdentificationCode, _locationCreateModel.ClassroomIdentificationCode);
}
public override void OnInspectorGUI()
{
//base.OnInspectorGUI();
DrawDefaultInspector();
LocationBuilder myScript = (LocationBuilder)target;
if (GUILayout.Button("Build Location"))
{
myScript.BuildLocation();
}
}
public void InValidateSubSequenceWithInvalidAccessionID()
{
// Get Values from XML node.
string sequence = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithDotOperatorNode,
Constants.ExpectedSequence);
string location = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithDotOperatorNode,
Constants.Location);
string alphabet = utilityObj.xmlUtil.GetTextValue(
Constants.LocationWithDotOperatorNode,
Constants.AlphabetNameNode);
// Create a sequence object.
ISequence seqObj = new Sequence(Utility.GetAlphabet(alphabet),
sequence);
// Build a location.
ILocationBuilder locBuilder = new LocationBuilder();
ILocation loc = locBuilder.GetLocation(location);
loc.Accession = "Invalid";
// Get sequence using location of the sequence with operator.
try
{
loc.GetSubSequence(seqObj);
Assert.Fail();
}
catch (ArgumentException)
{
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Validate the exception successfully"));
Console.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Validate the exception successfully"));
}
Dictionary <string, ISequence> refSeq = null;
// Validate GetSubSequence method with null location.
try
{
loc.GetSubSequence(null, refSeq);
Assert.Fail();
}
catch (ArgumentNullException)
{
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Validate the exception successfully"));
Console.WriteLine(string.Format((IFormatProvider)null,
"GenBankFeatures P2 : Validate the exception successfully"));
}
}
public async System.Threading.Tasks.Task Should_CreateWedding()
{
var defaultLocation = LocationBuilder.WithDefaults();
var dto = new CreateWedding.Request(1, DateTime.UtcNow, defaultLocation.Longitude, defaultLocation.Latitude);
var client = _fixture.CreateClient();
var response = await client.PostAsAsync <dynamic, CreateWedding.Response>(Endpoints.Post.CreateWedding, dto);
Assert.NotNull(response);
}
public void LocationCreatedByBuilderHasCountyGiveToBuilder(string houseNameNumber, string address1, string address2, string county, string city, string postcode)
{
var location = new LocationBuilder()
.WithHouseNameNumber(houseNameNumber)
.WithAddressLine1(address1)
.WithAddressLine2(address2)
.WithCounty(county)
.WithCity(city)
.WithPostcode(postcode);
location.CreateGbpAddress().County.Should().Be(county);
}
public void GenerateMultipleDestinationLocations_CheckCountOfDelimiters()
{
var result = new LocationBuilder().Append(new GeoLocation(80.123456, 80.123456))
.Append(new GeoLocation(80.123456, 80.123456))
.Append(new GeoLocation(80.123456, 80.123456))
.Build();
Assert.NotEmpty(result);
var len = result.Split('|').Length;
Assert.True(len == 3);
}
private static ImmutableArray <LocationFactory> CreateLocationFactories(SourceText source, ImmutableArray <Action <LocationBuilder> > locations)
{
return(locations.Select(location =>
{
return new LocationFactory(CreateLocation);
Location CreateLocation(SyntaxTree syntaxTree)
{
var builder = new LocationBuilder(source);
location.Invoke(builder);
return builder.Build(syntaxTree);
}
}).ToImmutableArray());
}
//x = posx, y = posz, z = roty
public static void BuildBeacons(List <Vector3> beacons)
{
instance = INSTANCE;
DestroyBeacons();
GameObject nextBeacon;
for (int i = 0; i < beacons.Count; i++)
{
nextBeacon = Instantiate(p_beacon, instance.transform.Find("Beacons"));
nextBeacon.name = "Beacon (" + i + ")";
nextBeacon.transform.position = new Vector3(beacons[i].x, s_beaconHeight, beacons[i].y);
nextBeacon.transform.rotation = Quaternion.Euler(0, beacons[i].z, 0);
nextBeacon.transform.localScale = new Vector3(s_beaconScale, s_beaconScale, s_beaconScale);
}
}
//[0] = id, [1] = posx, [2] = posz, [3] = roty
public static void BuildBeacons(List <string[]> beacons)
{
instance = INSTANCE;
DestroyBeacons();
GameObject nextBeacon;
for (int i = 0; i < beacons.Count; i++)
{
nextBeacon = Instantiate(p_beacon, instance.transform.Find("Beacons"));
nextBeacon.name = "Beacon_" + beacons[i][0];
nextBeacon.transform.position = new Vector3(float.Parse(beacons[i][1]), s_beaconHeight, float.Parse(beacons[i][2]));
nextBeacon.transform.rotation = Quaternion.Euler(0, float.Parse(beacons[i][3]), 0);
nextBeacon.transform.localScale = new Vector3(s_beaconScale, s_beaconScale, s_beaconScale);
nextBeacon.GetComponent <BeaconVisual>().SetInfo(beacons[i][0]);
}
}
public void BuildBeacons(Location location)
{
if (location.GetBeacons() == null)
{
Debug.Log("Locations's Beacons are null.");
return;
}
List <string> beacons = new List <string>();
for (int i = 0; i < location.GetBeacons().Count; i++)
{
Beacon beacon = location.GetBeacons()[i];
string format = beacon.id + "," + beacon.x + "," + beacon.y + "," + beacon.orientation;
beacons.Add(format);
}
LocationBuilder.BuildBeacons(beacons);
}
/// <summary>
/// InValidate GenBank location with invalid Start location data.
/// <param name="endData">Start data used for different test cases.</param>
/// </summary>
private static void InValidateLocationStartData(string startData)
{
// Build a location.
LocationResolver locResolver = new LocationResolver();
string location = "123.125";
ILocationBuilder locBuilder = new LocationBuilder();
ILocation loc = locBuilder.GetLocation(location);
// Set Invalid end data Validate GetStart method exception.
loc.StartData = startData;
try
{
locResolver.IsInStart(loc, 124);
Assert.Fail();
}
catch (Exception)
{
LogExceptionMessage();
}
}
public void Context()
{
var country = new CountryBuilder().Build();
UnitOfWork.Save(country);
var cinema = new CinemaBuilder().Build();
UnitOfWork.Save(cinema);
_film = new FilmBuilder().Build();
UnitOfWork.Save(_film);
var location = new LocationBuilder()
.WithCountry(country)
.WithLocationFilms(new LocationFilmArgs
{
Film = _film,
Cinemas = new[]
{
new LocationFilmCinemaArgs {
Cinema = cinema
}
}
})
.Build();
UnitOfWork.Save(location);
UnitOfWork.Clear();
var locationFilmId = location.Films.Single().Id;
_filmRatingDto = UnitOfWork.Session.QueryOver <LocationFilmDto>()
.Where(x => x.Id == locationFilmId)
.List().Single()
.Ratings.SingleOrDefault();
}
// Use this for initialization
void Start()
{
List <string> walls = new List <string>();
walls.Add("0.432, 0.000");
walls.Add("0.432, 1.618");
walls.Add("0.000, 1.618");
walls.Add("0.000, 9.179");
walls.Add("0.432, 9.179");
walls.Add("0.432, 9.462");
walls.Add("8.989, 9.462");
walls.Add("8.989, 0.000");
LocationBuilder.BuildWalls(walls);
List <string> beacons = new List <string>();
beacons.Add("beacon_1, 3.137, 0.000, 000");
beacons.Add("beacon_2, 1.091, 9.462, 180");
beacons.Add("beacon_3, 8.989, 1.946, 270");
beacons.Add("beacon_4, 8.989, 7.290, 270");
beacons.Add("beacon_5, 3.037, 9.462, 180");
beacons.Add("beacon_6, 0.000, 7.477, 090");
beacons.Add("beacon_7, 0.000, 5.632, 090");
beacons.Add("beacon_8, 0.000, 1.838, 090");
LocationBuilder.BuildBeacons(beacons);
List <string> datapoints = new List <string>();
datapoints.Add("0,0,0,0,clo1");
datapoints.Add("5,1,0,90,clo1,clo2,clo3,clo4");
datapoints.Add("10,2,5,15,clo1,clo3,clo5");
datapoints.Add("20,5,5,90,clo1,clo2,clo4");
datapoints.Add("30,6,2,270,clo3,clo5,clo7");
datapoints.Add("40,4,3,15,clo5,clo7,clo9");
datapoints.Add("50,7,5,15,clo0");
DataBuilder.INSTANCE.BuildData(datapoints);
}
public void TestLocationBuilder()
{
string location = "123";
string result = string.Empty;
ILocationBuilder locBuilder = new LocationBuilder();
ILocation loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(123, loc.End);
Assert.IsTrue(string.IsNullOrEmpty(loc.Separator));
Assert.AreEqual(LocationOperator.None, loc.Operator);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "123.125";
loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(125, loc.End);
Assert.AreEqual(".", loc.Separator);
Assert.AreEqual(LocationOperator.None, loc.Operator);
Assert.AreEqual(0, loc.SubLocations.Count);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "123^125";
loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(125, loc.End);
Assert.AreEqual("^", loc.Separator);
Assert.AreEqual(LocationOperator.None, loc.Operator);
Assert.AreEqual(0, loc.SubLocations.Count);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "123..125";
loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(125, loc.End);
Assert.AreEqual("..", loc.Separator);
Assert.AreEqual(LocationOperator.None, loc.Operator);
Assert.AreEqual(0, loc.SubLocations.Count);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "complement(123..125)";
loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(125, loc.End);
Assert.IsTrue(string.IsNullOrEmpty(loc.Separator));
Assert.AreEqual(LocationOperator.Complement, loc.Operator);
Assert.AreEqual(1, loc.SubLocations.Count);
Assert.AreEqual(123, loc.SubLocations[0].Start);
Assert.AreEqual(125, loc.SubLocations[0].End);
Assert.AreEqual("..", loc.SubLocations[0].Separator);
Assert.AreEqual(LocationOperator.None, loc.SubLocations[0].Operator);
Assert.AreEqual(0, loc.SubLocations[0].SubLocations.Count);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "join(complement(123..125),200..300)";
loc = locBuilder.GetLocation(location);
Assert.AreEqual(123, loc.Start);
Assert.AreEqual(300, loc.End);
Assert.IsTrue(string.IsNullOrEmpty(loc.Separator));
Assert.AreEqual(LocationOperator.Join, loc.Operator);
Assert.AreEqual(2, loc.SubLocations.Count);
Assert.AreEqual(123, loc.SubLocations[0].Start);
Assert.AreEqual(125, loc.SubLocations[0].End);
Assert.IsTrue(string.IsNullOrEmpty(loc.SubLocations[0].Separator));
Assert.AreEqual(LocationOperator.Complement, loc.SubLocations[0].Operator);
Assert.AreEqual(1, loc.SubLocations[0].SubLocations.Count);
Assert.AreEqual(200, loc.SubLocations[1].Start);
Assert.AreEqual(300, loc.SubLocations[1].End);
Assert.AreEqual("..", loc.SubLocations[1].Separator);
Assert.AreEqual(LocationOperator.None, loc.SubLocations[1].Operator);
Assert.AreEqual(0, loc.SubLocations[1].SubLocations.Count);
List <ILocation> leafLocs = loc.GetLeafLocations();
Assert.AreEqual(2, leafLocs.Count);
Assert.AreEqual(123, leafLocs[0].Start);
Assert.AreEqual(125, leafLocs[0].End);
Assert.AreEqual(200, leafLocs[1].Start);
Assert.AreEqual(300, leafLocs[1].End);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "join(complement(123..125),complement(200..300))";
loc = locBuilder.GetLocation(location);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "join(complement(123),complement(200..300))";
loc = locBuilder.GetLocation(location);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "complement(join(123..125,200..300))";
loc = locBuilder.GetLocation(location);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "order(123..125,200..300)";
loc = locBuilder.GetLocation(location);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
location = "complement(join(<123..125,200..>300))";
loc = locBuilder.GetLocation(location);
result = locBuilder.GetLocationString(loc);
Assert.AreEqual(location, result);
}
public void LocationBuilderCreatesNldAddressInstance()
{
var location = new LocationBuilder();
location.CreateNldAddress().Should().BeOfType <NldAddress>();
}
public void GenBankMetadataClone()
{
LocationBuilder locBuilder = new LocationBuilder();
GenBankMetadata metadata = new GenBankMetadata();
metadata.Accession = new GenBankAccession();
metadata.Accession.Primary = "PAccession";
metadata.Accession.Secondary.Add("SAccession1");
metadata.Accession.Secondary.Add("SAccession2");
metadata.BaseCount = "a 1 c 2";
metadata.Comments.Add("Comment1");
metadata.Comments.Add("Comment2");
metadata.Contig = "Contig Info";
metadata.DBLink = new CrossReferenceLink();
metadata.DBLink.Type = CrossReferenceType.Project;
metadata.DBLink.Numbers.Add("100");
metadata.DBLink.Numbers.Add("200");
metadata.DBSource = "DbSourceInfo";
metadata.Definition = "Defination info";
metadata.Features = new SequenceFeatures();
FeatureItem feature = new FeatureItem("feature1", "1");
List <string> qualifierValues = new List <string>();
qualifierValues.Add("qualifier1value1");
qualifierValues.Add("qualifier1value2");
feature.Qualifiers.Add("qualifier1", qualifierValues);
metadata.Features.All.Add(feature);
feature = new FeatureItem("feature2", "2");
qualifierValues = new List <string>();
qualifierValues.Add("qualifier2value1");
qualifierValues.Add("qualifier2value2");
feature.Qualifiers.Add("qualifier2", qualifierValues);
metadata.Features.All.Add(feature);
feature = new FeatureItem("feature2", "2");
qualifierValues = new List <string>();
qualifierValues.Add("qualifier2value1");
qualifierValues.Add("qualifier2value2");
feature.Qualifiers.Add("qualifier2", qualifierValues);
metadata.Features.All.Add(feature);
metadata.Keywords = "keywords data";
metadata.Locus = new GenBankLocusInfo();
metadata.Locus.Date = DateTime.Now;
metadata.Locus.DivisionCode = SequenceDivisionCode.CON;
metadata.Locus.MoleculeType = MoleculeType.DNA;
metadata.Locus.Name = "LocusName";
metadata.Locus.SequenceLength = 100;
metadata.Locus.SequenceType = "bp";
metadata.Locus.Strand = SequenceStrandType.Double;
metadata.Locus.StrandTopology = SequenceStrandTopology.Linear;
metadata.Origin = "origin info";
metadata.Primary = "Primary info";
metadata.Project = new ProjectIdentifier();
metadata.Project.Name = "Project1";
metadata.Project.Numbers.Add("101");
metadata.Project.Numbers.Add("201");
CitationReference reference = new CitationReference();
reference.Authors = "Authors";
reference.Consortiums = "Consortiums";
reference.Journal = "Journal";
reference.Location = "3";
reference.Medline = "Medline info";
reference.Number = 1;
reference.PubMed = "pubmid";
reference.Remarks = "remarks";
reference.Title = "Title of the book";
metadata.References.Add(reference);
reference = new CitationReference();
reference.Authors = "Authors";
reference.Consortiums = "Consortiums";
reference.Journal = "Journal";
reference.Location = "4";
reference.Medline = "Medline info";
reference.Number = 2;
reference.PubMed = "pubmid";
reference.Remarks = "remarks";
reference.Title = "Title of the book";
metadata.References.Add(reference);
metadata.Segment = new SequenceSegment();
metadata.Segment.Count = 2;
metadata.Segment.Current = 1;
metadata.Source = new SequenceSource();
metadata.Source.CommonName = "ABC Xyz";
metadata.Source.Organism.Genus = "ABC";
metadata.Source.Organism.Species = "Xyz";
metadata.Source.Organism.ClassLevels = "123 123";
metadata.Version = new GenBankVersion();
metadata.Version.Accession = "PAccession";
metadata.Version.Version = "1";
metadata.Version.GINumber = "12345";
GenBankMetadata clonemetadta = metadata.Clone();
Assert.AreEqual(clonemetadta.Accession.Primary, metadata.Accession.Primary);
for (int i = 0; i < clonemetadta.Accession.Secondary.Count; i++)
{
Assert.AreEqual(clonemetadta.Accession.Secondary[i], metadata.Accession.Secondary[i]);
}
Assert.AreEqual(clonemetadta.BaseCount, metadata.BaseCount);
for (int i = 0; i < clonemetadta.Comments.Count; i++)
{
Assert.AreEqual(clonemetadta.Comments[i], metadata.Comments[i]);
}
Assert.AreEqual(clonemetadta.Contig, metadata.Contig);
Assert.AreEqual(clonemetadta.DBLink.Type, metadata.DBLink.Type);
for (int i = 0; i < clonemetadta.DBLink.Numbers.Count; i++)
{
Assert.AreEqual(clonemetadta.DBLink.Numbers[i], metadata.DBLink.Numbers[i]);
}
Assert.AreEqual(clonemetadta.DBSource, metadata.DBSource);
Assert.AreEqual(clonemetadta.Definition, metadata.Definition);
for (int i = 0; i < clonemetadta.Features.All.Count; i++)
{
Assert.AreEqual(clonemetadta.Features.All[i].Key, metadata.Features.All[i].Key);
Assert.AreEqual(locBuilder.GetLocationString(clonemetadta.Features.All[i].Location), locBuilder.GetLocationString(metadata.Features.All[i].Location));
foreach (KeyValuePair <string, List <string> > kvp in clonemetadta.Features.All[i].Qualifiers)
{
if (metadata.Features.All[i].Qualifiers.ContainsKey(kvp.Key))
{
if (kvp.Value == null)
{
Assert.IsNull(metadata.Features.All[i].Qualifiers[kvp.Key]);
}
else
{
for (int j = 0; j < kvp.Value.Count; j++)
{
Assert.AreEqual(kvp.Value[j], metadata.Features.All[i].Qualifiers[kvp.Key][j]);
}
}
}
else
{
Assert.Fail();
}
}
}
Assert.AreEqual(clonemetadta.Keywords, metadata.Keywords);
Assert.AreEqual(clonemetadta.Locus.Date, metadata.Locus.Date);
Assert.AreEqual(clonemetadta.Locus.DivisionCode, metadata.Locus.DivisionCode);
Assert.AreEqual(clonemetadta.Locus.MoleculeType, metadata.Locus.MoleculeType);
Assert.AreEqual(clonemetadta.Locus.Name, metadata.Locus.Name);
Assert.AreEqual(clonemetadta.Locus.SequenceLength, metadata.Locus.SequenceLength);
Assert.AreEqual(clonemetadta.Locus.SequenceType, metadata.Locus.SequenceType);
Assert.AreEqual(clonemetadta.Locus.Strand, metadata.Locus.Strand);
Assert.AreEqual(clonemetadta.Locus.StrandTopology, metadata.Locus.StrandTopology);
Assert.AreEqual(clonemetadta.Origin, clonemetadta.Origin);
Assert.AreEqual(clonemetadta.Primary, metadata.Primary);
Assert.AreEqual(clonemetadta.Project.Name, metadata.Project.Name);
for (int i = 0; i < clonemetadta.Project.Numbers.Count; i++)
{
Assert.AreEqual(clonemetadta.Project.Numbers[i], metadata.Project.Numbers[i]);
}
for (int i = 0; i < clonemetadta.References.Count; i++)
{
Assert.AreEqual(clonemetadta.References[i].Authors, metadata.References[i].Authors);
Assert.AreEqual(clonemetadta.References[i].Consortiums, metadata.References[i].Consortiums);
Assert.AreEqual(clonemetadta.References[i].Journal, metadata.References[i].Journal);
Assert.AreEqual(clonemetadta.References[i].Location, metadata.References[i].Location);
Assert.AreEqual(clonemetadta.References[i].Medline, metadata.References[i].Medline);
Assert.AreEqual(clonemetadta.References[i].Number, metadata.References[i].Number);
Assert.AreEqual(clonemetadta.References[i].PubMed, metadata.References[i].PubMed);
Assert.AreEqual(clonemetadta.References[i].Remarks, metadata.References[i].Remarks);
Assert.AreEqual(clonemetadta.References[i].Title, metadata.References[i].Title);
}
Assert.AreEqual(clonemetadta.Segment.Current, metadata.Segment.Current);
Assert.AreEqual(clonemetadta.Segment.Count, metadata.Segment.Count);
Assert.AreEqual(clonemetadta.Source.CommonName, metadata.Source.CommonName);
Assert.AreEqual(clonemetadta.Source.Organism.ClassLevels, metadata.Source.Organism.ClassLevels);
Assert.AreEqual(clonemetadta.Source.Organism.Genus, metadata.Source.Organism.Genus);
Assert.AreEqual(clonemetadta.Source.Organism.Species, metadata.Source.Organism.Species);
Assert.AreEqual(clonemetadta.Version.Accession, metadata.Version.Accession);
Assert.AreEqual(clonemetadta.Version.CompoundAccession, metadata.Version.CompoundAccession);
Assert.AreEqual(clonemetadta.Version.GINumber, metadata.Version.GINumber);
Assert.AreEqual(clonemetadta.Version.Version, metadata.Version.Version);
}